v5.0.1: update permissible values

What's Changed

• Missing some requirements for prod by @daisieh in #271
• Update versioned AJCC to single AJCC in enum and synth data by @mshadbolt in #272
• Update versioned AJCC to single AJCC in enum and synth data by @SonQBChau in #273

Full Changelog: v5.0.0...v5.0.1

v5.0.0: MoH data model 3.1

MoH data model 3.1, plus small changes to server, logging, auth.

What's Changed

• Stable catchup by @daisieh in #204
• DIG-1584: remove all the unused discovery endpoints by @SonQBChau in #199
• DIG-1439: make secret key in container by @daisieh in #206
• DIG-1582: Implement overview thresholds & DIG-1533: Change cancer_type to primary_site by @SonQBChau in #205
• Do not log service-info (prevent health check flooding) by @OrdiNeu in #207
• Don't pass in OPA_SECRET by @daisieh in #208
• DIG-1381: Switch katsu from uwsgi to Gunicorn by @SonQBChau in #209
• allow 'single quote' pr titles by @mshadbolt in #230
• DIG-1669: Automate incrementing schema version when schemas get updated by @SonQBChau in #235
• DIG-1600 & DIG-1646: Improve settings by @SonQBChau in #210
• DIG-1635 : Allow ingest to be completed in batches per object by @SonQBChau in #237
• DIG-1663: Allow program curators to ingest/delete by @SonQBChau in #238
• Manually update katsu's OpenAPI spec to v3.0 data model by @OrdiNeu in #239
• Optimization: only check allowed for unique programs by @daisieh in #240
• update postgres instruction by @SonQBChau in #249
• Update katsu to the v3.0 data model part 1 by @SonQBChau in #246
• Update katsu to the v3.0 data model part 2 by @SonQBChau in #247
• Update katsu to the v3.0 data model part 3 by @SonQBChau in #248
• Fix test errors by @SonQBChau in #251
• DIG-1687: Generate synthetic data with factory boy by @mshadbolt in #250
• fix local logging by @SonQBChau in #253
• DIG-1719: switch to candigv2-logging module by @daisieh in #252
• Add warnings to not run script in production by @mshadbolt in #254
• Upgrade to Model 3 by @SonQBChau in #255
• rename db by @SonQBChau in #256
• Update dev.txt by @daisieh in #257
• DIG-1720: add service token auth for ingest by @daisieh in #258
• DIG-1764: Update katsu permissible values for model 3.1 by @mshadbolt in #259
• Bump authx version by @OrdiNeu in #260
• DIG-1782: Add _not_available for all numeric fields by @SonQBChau in #261
• fix available capitalisation by @mshadbolt in #262
• DIG-1768 : update factories, synth data by @mshadbolt in #263
• add schema to static folder by @SonQBChau in #265
• Performance improvement: Combine multiple queries that are commonly performed together into one endpoint by @OrdiNeu in #266
• Bugfix/followup naming by @SonQBChau in #267
• add na fields for pr/er by @mshadbolt in #268
• Some minor updates to synth data by @mshadbolt in #269
• v5.0.0: MoH data model 3.1 by @daisieh in #270

Full Changelog: v4.2.2...v5.0.0

v4.2.2: Stable plus hotfixes

What's Changed

• Hotfix for UHN prod: add "query" to allowed hosts by @daisieh in #203

Full Changelog: v4.2.1...v4.2.2

v4.2.1: caching overview APIs, misc fixes

Highlights

• Overview stats cached in redis

What's Changed

• DIG-1513 update packages by @SonQBChau in #195
• Sonchau/hot fix explorer by @SonQBChau in #196
• DIG-1567: Katsu overview APIs cached in redis by @SonQBChau in #197
• Cleanup by @daisieh in #198
• DIG-1625: Fix Documentation GitHub action by @SonQBChau in #200

Full Changelog: v4.0.0...v4.2.1

v4.0.0: Intervals, Explorer API, convert.py, discovery

Summary of Changes

• Date intervals change
• Explorer API
• Katsu's convert.py script can specify the name for datasets

What's Changed

• DIG-1460: hotfixes from dev? by @daisieh in #177
• DIG-1244: date intervals part 1 - code only by @SonQBChau in #179
• date intervals part 2 - synthetic data by @SonQBChau in #180
• Regular expression fixes by @yavyx in #182
• DIG-1317: Katsu's convert.py script can specify the name for datasets by @lilyyangyi301 in #183
• Update README.md by @SonQBChau in #184
• DIG-1394: Discovery for programs API returns whole program object by @OrdiNeu in #186
• Change dispatch branch name from stable to develop by @mshadbolt in #185
• Fix unused import by @OrdiNeu in #187
• DIG-1376 :Update GH Action to improve PR title and description by @mshadbolt in #188
• DIG-1239: Donor explorer api by @SonQBChau in #190
• Sonchau/create db script by @SonQBChau in #191
• Updated er_diagram script and output by @mshadbolt in #192

New Contributors

• @lilyyangyi301 made their first contribution in #183

Full Changelog: v3.0.0...v3.1.0

v3.0.0: UUIDs for all entities

Highlights:

• UUIDs everywhere
• Better docs
• Query OpenAPI spec
• Removed irrelevant bento code

What's Changed

• Return response with standard dicts by @daisieh in #155
• Query OpenAPI Spec by @OrdiNeu in #157
• DIG-1355: Sonchau/UUID with fk by @SonQBChau in #158
• Sonchau/fix docs commit sha by @SonQBChau in #170
• Update documentation and diagram by @mshadbolt in #171
• update authx to v2.0.0 by @daisieh in #173
• Remove bento codes by @SonQBChau in #172
• DIG-1418: fix enum and validator not in nested schema by @SonQBChau in #174
• katsu validators by @SonQBChau in #175

Full Changelog: v2.3.0...v2.4.0

v2.3.0: Model updates and Debian change

Summary

Model updates (see here), addition of the service-info endpoint, and an updated ER diagram workflow. This also includes the change from Alpine to Debian.

What's Changed

• Update utils.py by @SonQBChau in #145
• Update models.py by @SonQBChau in #148
• construct url for schema.yml by @daisieh in #146
• Sonchau/test date to string by @SonQBChau in #149
• Sonchau/service info by @SonQBChau in #150
• DIG-1320: Update Dockerfile by @SonQBChau in #153
• DIG:1217 Create ER diagram workflow and add to READMEs by @mshadbolt in #154

New Contributors

• @mshadbolt made their first contribution in #154

Full Changelog: v2.2.1...v2.3.0

v2.2.1: add tests

What's Changed

• add factory-boy to requirements
• add trailing slash to ingest API to make it consistent with router
• update permission and authentication with is_admin mock
• remove extra id from nested serializer
• add factories class to generate mock data
• add tests for the required models and 1 optional model: program, donor, sample registration, specimen, primary diagnoses, treatment, follow up and chemotherapy.
• add codecov token to github action

Full Changelog: v2.2.0...v2.2.1

katsu stable release 2.2.0

Summary of important changes:

• Added new MoH models: Radiation, Immunotherapy, Surgery...
• Add Mockaroo schemas
• Implemented API views for various models
• Added permissions class
• Implemented the discovery API and split the API into MoH and discovery.
• Added serializers, basic filters, and pagination for MoH models.
• Removed mCODE and ARGO-related code and tests as they were deprecated and superseded by the MoH model.
• Added documentation for the API and schema for MoH.
• Added ingest API and related URLs.
• Added small, medium, and large synthetic datasets with new relationships.
• Updated authentication settings
• Simplified relationships and fixed handling of null values in endpoints.
• Added uwsgi for production server and whitenoise for static files.
• Added user and group "candig" for Dockerfile.
• Created new delete dataset API and fixed the delete API for proper admin access.
• Added security settings for production.
• Updated dependencies, settings, and README.

What's Changed

• Sonchau/moh part 4 by @SonQBChau in #77
• Sonchau/moh part 5 by @SonQBChau in #78
• Sonchau/moh part 6 by @SonQBChau in #79
• makemigrations and migrate by @SonQBChau in #80
• Sonchau/moh part 8 by @SonQBChau in #81
• Sonchau/moh part 9 by @SonQBChau in #83
• Sonchau/moh part 10 by @SonQBChau in #84
• Sonchau/moh part 11 by @SonQBChau in #85
• Sonchau/moh part 12 by @SonQBChau in #86
• Sonchau/moh part 13 by @SonQBChau in #87
• Sonchau/moh part 14 by @SonQBChau in #88
• Sonchau/moh part 15 by @SonQBChau in #89
• Sonchau/moh part 16 by @SonQBChau in #90
• Remove mCODE/ARGO code by @yavyx in #92
• Sonchau/moh part 17 docs by @SonQBChau in #91
• Sonchau/moh part 18 by @SonQBChau in #94
• Sonchau/moh part 19 by @SonQBChau in #95
• Add field validation to MoH model by @yavyx in #96
• Auto generate schema GHA by @yavyx in #98
• Sonchau/moh part 20 by @SonQBChau in #97
• Sonchau moh part 21 by @SonQBChau in #99
• Sonchau/moh part 22 by @SonQBChau in #100
• Sonchau/moh part 23 by @SonQBChau in #101
• Sonchau/moh part 24 by @SonQBChau in #102
• Sonchau/moh part 25 by @SonQBChau in #103
• Sonchau/moh part 26 by @SonQBChau in #104
• Overview endpoints by @yavyx in #106
• Sonchau/hotfix program id by @SonQBChau in #109
• Sonchau/moh part 27 by @SonQBChau in #105
• Add label to dockerfile by @daisieh in #111
• Sonchau/moh part 28 by @SonQBChau in #110
• Sonchau/moh part 29 by @SonQBChau in #112
• Sonchau/moh part 30 by @SonQBChau in #113
• Update python to 3.11 by @SonQBChau in #114
• Mohpackets model testing by @yavyx in #116
• MoH v2 model update by @SonQBChau in #115
• Overview null values by @yavyx in #118
• Update serializers_nested.py by @SonQBChau in #121
• Update serializers_nested.py by @SonQBChau in #122
• Fix nested treatment serializer by @jman005 in #123
• Sonchau/hot fix by @SonQBChau in #124
• Add sha to schema description by @daisieh in #125
• add uwsgi to katsu by @SonQBChau in #127
• update synthetic data medium size to v2 by @SonQBChau in #120
• update large synthetic dataset to v2 by @SonQBChau in #126
• Sonchau/fix openschema by @SonQBChau in #130
• delete a dataset api by @SonQBChau in #132
• Sonchau/part 35 by @SonQBChau in #133
• Fix a 500 server error when no data is present by @OrdiNeu in #134
• Sonchau/hotfix followup by @SonQBChau in #135
• Sonchau/part 36 by @SonQBChau in #136
• Update version 2.2.0 by @SonQBChau in #138

New Contributors

• @yavyx made their first contribution in #92
• @jman005 made their first contribution in #123
• @OrdiNeu made their first contribution in #134

Full Changelog: v1.5.1...v2.2.0

DIG-895: candigv2-authx integration, mohpacket start

What's Changed

• DIG-895: Use candigv2-authx module by @daisieh in #72
• Sonchau/moh part 1 by @SonQBChau in #73
• Update settings.py by @daisieh in #75
• Sonchau/moh part 2 by @SonQBChau in #74
• Sonchau/moh part 3 by @SonQBChau in #76

Full Changelog: v1.5.0...v1.5.1