Read and convert .cls, .gct, and .gmt 💾

Check out GSEA.jl.

Julia

using CLSGCTGMT

CLSGCTGMT.read_cls(joinpath("data", "a.cls"))

CLSGCTGMT.read_gct(joinpath("data", "b.gct"))

CLSGCTGMT.read_gmt(joinpath("data", "c.gmt"))

Command Line Interface

clsgctgmt cls ~/Downloads/a.tsv data/a.cls

clsgctgmt gct ~/Downloads/b.tsv data/b.gct

clsgctgmt gmt ~/Downloads/cd.json data/c.gmt data/d.gmt

Install

We plan to sign this app for macOS soon. In the meantime, please enable third-party apps.

Download and extract the latest release.

PATH=$(pwd)/clsgctgmt/bin:$PATH

Build

julia --project deps/build.jl

PATH=~/.julia/bin:$PATH

Contact Us

If you have any questions, issues, or concerns, please feel free to open a GitHub issue.

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Made by Kata 🥋