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Merge pull request #258 from agbeltran/development
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Updating to latest version of BII-I-1
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@agbeltran
agbeltran committed Jan 20, 2014
2 parents bedae16 + 1d37043 commit 32db03f
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224 changes: 112 additions & 112 deletions isatab files/BII-I-1/a_metabolome.txt
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30 changes: 15 additions & 15 deletions isatab files/BII-I-1/a_microarray.txt
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38 changes: 19 additions & 19 deletions isatab files/BII-I-1/a_proteome.txt
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"Sample Name" "Protocol REF" "Extract Name" "Protocol REF" "Labeled Extract Name" "Label" "Term Source REF" "Term Accession Number" "MS Assay Name" "Comment[PRIDE Accession]" "Comment[PRIDE Processed Data Accession]" "Raw Spectral Data File" "Normalization Name" "Protein Assignment File" "Peptide Assignment File" "Post Translational Modification Assignment File" "Data Transformation Name" "Derived Spectral Data File" "Factor Value[limiting nutrient]" "Term Source REF" "Term Accession Number" "Factor Value[rate]" "Unit" "Term Source REF" "Term Accession Number"
"S-0.1-aliquot11" "protein extraction" "S-0.1" "ITRAQ labeling" "JC_S-0.1" "iTRAQ reagent 117" "" "" "8761" "8761" "8761" "spectrum.mzdata" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.1" "l/hr" "" ""
"C-0.1-aliquot11" "protein extraction" "C-0.1" "ITRAQ labeling" "JC_C-0.1" "iTRAQ reagent 116" "" "" "8761" "8761" "8761" "spectrum.mzdata" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.1" "l/hr" "" ""
"N-0.1-aliquot11" "protein extraction" "N-0.1" "ITRAQ labeling" "JC_N-0.1" "iTRAQ reagent 115" "" "" "8761" "8761" "8761" "spectrum.mzdata" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.1" "l/hr" "" ""
"S-0.1-aliquot11" "protein extraction" "S-0.1" "ITRAQ labeling" "Pool1" "iTRAQ reagent 114" "" "" "8761" "8761" "8761" "spectrum.mzdata" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "" "" "" "" "l/hr" "" ""
"C-0.1-aliquot11" "protein extraction" "C-0.1" "ITRAQ labeling" "Pool1" "iTRAQ reagent 114" "" "" "8761" "8761" "8761" "spectrum.mzdata" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "" "" "" "" "l/hr" "" ""
"N-0.1-aliquot11" "protein extraction" "N-0.1" "ITRAQ labeling" "Pool1" "iTRAQ reagent 114" "" "" "8761" "8761" "8761" "spectrum.mzdata" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "" "" "" "" "l/hr" "" ""
"C-0.2-aliquot11" "protein extraction" "C-0.2" "ITRAQ labeling" "JC_C-0.2" "iTRAQ reagent 117" "" "" "8762" "8762" "8762" "spectrum.mzdata" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.2" "l/hr" "" ""
"N-0.2-aliquot11" "protein extraction" "N-0.2" "ITRAQ labeling" "JC_N-0.2" "iTRAQ reagent 116" "" "" "8762" "8762" "8762" "spectrum.mzdata" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.2" "l/hr" "" ""
"P-0.1-aliquot11" "protein extraction" "P-0.1" "ITRAQ labeling" "JC_P-0.1" "iTRAQ reagent 115" "" "" "8762" "8762" "8762" "spectrum.mzdata" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.1" "l/hr" "" ""
"C-0.2-aliquot11" "protein extraction" "C-0.2" "ITRAQ labeling" "Pool2" "iTRAQ reagent 114" "" "" "8762" "8762" "8762" "spectrum.mzdata" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "" "" "" "" "l/hr" "" ""
"N-0.2-aliquot11" "protein extraction" "N-0.2" "ITRAQ labeling" "Pool2" "iTRAQ reagent 114" "" "" "8762" "8762" "8762" "spectrum.mzdata" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "" "" "" "" "l/hr" "" ""
"P-0.1-aliquot11" "protein extraction" "P-0.1" "ITRAQ labeling" "Pool2" "iTRAQ reagent 114" "" "" "8762" "8762" "8762" "spectrum.mzdata" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "" "" "" "" "l/hr" "" ""
"P-0.2-aliquot11" "protein extraction" "P-0.2" "ITRAQ labeling" "JC_P-0.2" "iTRAQ reagent 116" "" "" "8763" "8763" "8763" "spectrum.mzdata" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.2" "l/hr" "" ""
"S-0.2-aliquot11" "protein extraction" "S-0.2" "ITRAQ labeling" "JC_S-0.2" "iTRAQ reagent 115" "" "" "8763" "8763" "8763" "spectrum.mzdata" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hr" "" ""
"P-0.2-aliquot11" "protein extraction" "P-0.2" "ITRAQ labeling" "Pool3" "iTRAQ reagent 117" "" "" "8763" "8763" "8763" "spectrum.mzdata" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "" "" "" "" "l/hr" "" ""
"S-0.2-aliquot11" "protein extraction" "S-0.2" "ITRAQ labeling" "Pool3" "iTRAQ reagent 117" "" "" "8763" "8763" "8763" "spectrum.mzdata" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "" "" "" "" "l/hr" "" ""
"P-0.2-aliquot11" "protein extraction" "P-0.2" "ITRAQ labeling" "Pool3" "iTRAQ reagent 114" "" "" "8763" "8763" "8763" "spectrum.mzdata" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "" "" "" "" "l/hr" "" ""
"S-0.2-aliquot11" "protein extraction" "S-0.2" "ITRAQ labeling" "Pool3" "iTRAQ reagent 114" "" "" "8763" "8763" "8763" "spectrum.mzdata" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "" "" "" "" "l/hr" "" ""
"Sample Name" "Protocol REF" "Extract Name" "Protocol REF" "Labeled Extract Name" "Label" "Term Source REF" "Term Accession Number" "MS Assay Name" "Comment[PRIDE Accession]" "Comment[PRIDE Processed Data Accession]" "Raw Spectral Data File" "Comment[Data Record Accession]" "Comment[Data Repository]" "Normalization Name" "Protein Assignment File" "Peptide Assignment File" "Post Translational Modification Assignment File" "Data Transformation Name" "Derived Spectral Data File" "Factor Value[limiting nutrient]" "Term Source REF" "Term Accession Number" "Factor Value[rate]" "Unit" "Term Source REF" "Term Accession Number"
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"C-0.1-aliquot11" "protein extraction" "C-0.1" "ITRAQ labeling" "JC_C-0.1" "iTRAQ reagent 116" "" "" "8761" "8761" "8761" "spectrum.mzdata" "" "" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.1" "l/hr" "" ""
"N-0.1-aliquot11" "protein extraction" "N-0.1" "ITRAQ labeling" "JC_N-0.1" "iTRAQ reagent 115" "" "" "8761" "8761" "8761" "spectrum.mzdata" "" "" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.1" "l/hr" "" ""
"S-0.1-aliquot11" "protein extraction" "S-0.1" "ITRAQ labeling" "Pool1" "iTRAQ reagent 114" "" "" "8761" "8761" "8761" "spectrum.mzdata" "" "" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "" "" "" "" "l/hr" "" ""
"C-0.1-aliquot11" "protein extraction" "C-0.1" "ITRAQ labeling" "Pool1" "iTRAQ reagent 114" "" "" "8761" "8761" "8761" "spectrum.mzdata" "" "" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "" "" "" "" "l/hr" "" ""
"N-0.1-aliquot11" "protein extraction" "N-0.1" "ITRAQ labeling" "Pool1" "iTRAQ reagent 114" "" "" "8761" "8761" "8761" "spectrum.mzdata" "" "" "norm1" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "" "" "" "" "l/hr" "" ""
"C-0.2-aliquot11" "protein extraction" "C-0.2" "ITRAQ labeling" "JC_C-0.2" "iTRAQ reagent 117" "" "" "8762" "8762" "8762" "spectrum.mzdata" "" "" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "elemental carbon" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33415" "0.2" "l/hr" "" ""
"N-0.2-aliquot11" "protein extraction" "N-0.2" "ITRAQ labeling" "JC_N-0.2" "iTRAQ reagent 116" "" "" "8762" "8762" "8762" "spectrum.mzdata" "" "" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "elemental nitrogen" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33267" "0.2" "l/hr" "" ""
"P-0.1-aliquot11" "protein extraction" "P-0.1" "ITRAQ labeling" "JC_P-0.1" "iTRAQ reagent 115" "" "" "8762" "8762" "8762" "spectrum.mzdata" "" "" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.1" "l/hr" "" ""
"C-0.2-aliquot11" "protein extraction" "C-0.2" "ITRAQ labeling" "Pool2" "iTRAQ reagent 114" "" "" "8762" "8762" "8762" "spectrum.mzdata" "" "" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "" "" "" "" "l/hr" "" ""
"N-0.2-aliquot11" "protein extraction" "N-0.2" "ITRAQ labeling" "Pool2" "iTRAQ reagent 114" "" "" "8762" "8762" "8762" "spectrum.mzdata" "" "" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "" "" "" "" "l/hr" "" ""
"P-0.1-aliquot11" "protein extraction" "P-0.1" "ITRAQ labeling" "Pool2" "iTRAQ reagent 114" "" "" "8762" "8762" "8762" "spectrum.mzdata" "" "" "norm2" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "" "" "" "" "l/hr" "" ""
"P-0.2-aliquot11" "protein extraction" "P-0.2" "ITRAQ labeling" "JC_P-0.2" "iTRAQ reagent 116" "" "" "8763" "8763" "8763" "spectrum.mzdata" "" "" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "elemental phosphorus" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33464" "0.2" "l/hr" "" ""
"S-0.2-aliquot11" "protein extraction" "S-0.2" "ITRAQ labeling" "JC_S-0.2" "iTRAQ reagent 115" "" "" "8763" "8763" "8763" "spectrum.mzdata" "" "" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "elemental sulfur" "CHEBI" "http://purl.obolibrary.org/obo/CHEBI_33403" "0.2" "l/hr" "" ""
"P-0.2-aliquot11" "protein extraction" "P-0.2" "ITRAQ labeling" "Pool3" "iTRAQ reagent 117" "" "" "8763" "8763" "8763" "spectrum.mzdata" "" "" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "" "" "" "" "l/hr" "" ""
"S-0.2-aliquot11" "protein extraction" "S-0.2" "ITRAQ labeling" "Pool3" "iTRAQ reagent 117" "" "" "8763" "8763" "8763" "spectrum.mzdata" "" "" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "" "" "" "" "l/hr" "" ""
"P-0.2-aliquot11" "protein extraction" "P-0.2" "ITRAQ labeling" "Pool3" "iTRAQ reagent 114" "" "" "8763" "8763" "8763" "spectrum.mzdata" "" "" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "" "" "" "" "l/hr" "" ""
"S-0.2-aliquot11" "protein extraction" "S-0.2" "ITRAQ labeling" "Pool3" "iTRAQ reagent 114" "" "" "8763" "8763" "8763" "spectrum.mzdata" "" "" "norm3" "proteins.csv" "peptides.csv" "ptms.csv" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "" "" "" "" "l/hr" "" ""
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