Webapp: move js libs

Makefile

@@ -15,7 +15,7 @@ SCRIPTSSOURCE = $(wildcard $(MANSCRIPTREP)*.sh)
 SCRIPTSWITNESS = $(SCRIPTSSOURCE:.sh=.witness) $(MANGENREP)version.tex
 MODELS = $(wildcard $(MANKAPPAMODELSREP)*.ka)
 
-RESOURCES_HTML=$(wildcard gui/shared/*.js) $(wildcard gui/viz/*.js) $(wildcard gui/viz/*.css) gui/resources/favicon.ico gui/entry_point/package.json
+RESOURCES_HTML=$(wildcard gui/js_lib/*.js) $(wildcard gui/js_lib/viz/*.js) $(wildcard gui/resources/*.css) gui/resources/favicon.ico gui/entry_point/package.json gui/entry_point/main.js
 
 # `APP_EXT` defines where to fetch the js libs.
 #   `local` is to download them from the dev website e.g. github and saving them locally.

core/simulation/dune

@@ -19,8 +19,8 @@
  (targets resource_strings.ml)
  (deps
   ../../dev/load_files_into_ocaml_string_vars.sh
-  ../../gui/shared/flux.js
-  ../../gui/viz/common.js)
+  ../../gui/js_lib/flux.js
+  ../../gui/js_lib/viz/common.js)
  (action
   (with-stdout-to
    %{targets}

gui/js_lib/README.md

@@ -0,0 +1,9 @@
+This directory contains javascript libraries.
+
+`viz` contains js libs for vizualization from kappa tools.
+
+`flux.js` is used by the webapp, and by the html generation in ./core/simulation
+
+`graphlogger.js` by the webapp.
+
+`parser.js` might be unused.

gui/js_lib/viz/README.md

@@ -0,0 +1,7 @@
+This directory contains js libs for vizualization from kappa tools.
+
+Some files here are used in the webapp.
+
+`common.js` is also included by the html generation in `core/simulation`
+
+`Kappa.js` might be unused, and includes info for kappa language syntax highlighting.

gui/resources/README.md

@@ -0,0 +1 @@
+Here are resources used to build the webapp