Merge pull request #63 from Lifebrain/website

using github actions workflow for website

.github/workflows/pkgdown.yaml

@@ -1,59 +1,50 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches:
-      - main
-      - master
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
 
 name: pkgdown
 
+permissions: read-all
+
 jobs:
   pkgdown:
-    runs-on: ubuntu-18.04
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
     env:
-      RSPM: https://packagemanager.rstudio.com/cran/__linux__/bionic/latest
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-
+    permissions:
+      contents: write
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
-      - uses: r-lib/actions/setup-r@v1
-        id: install-r
+      - uses: r-lib/actions/setup-pandoc@v2
 
-      - uses: r-lib/actions/setup-pandoc@v1
-
-      - name: Install pak and query dependencies
-        run: |
-          install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")
-          saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds")
-        shell: Rscript {0}
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
 
-      - name: Restore R package cache
-        uses: actions/cache@v2
+      - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          path: |
-            ${{ env.R_LIBS_USER }}/*
-            !${{ env.R_LIBS_USER }}/pak
-          key: ubuntu-18.04-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }}
-          restore-keys: ubuntu-18.04-${{ steps.install-r.outputs.installed-r-version }}-1-
-
-      - name: Install system dependencies
-        if: runner.os == 'Linux'
-        run: |
-          pak::local_system_requirements(execute = TRUE)
-          pak::pkg_system_requirements("pkgdown", execute = TRUE)
-        shell: Rscript {0}
+          extra-packages: any::pkgdown, local::.
+          needs: website
 
-      - name: Install dependencies
-        run: |
-          pak::local_install_dev_deps(upgrade = TRUE, dependencies = c("all", "Config/Needs/website"))
-          pak::pkg_install("pkgdown")
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
         shell: Rscript {0}
 
-      - name: Install package
-        run: R CMD INSTALL .
-
-      - name: Build and deploy pkgdown site
-        run: |
-          git config --local user.name "$GITHUB_ACTOR"
-          git config --local user.email "[email protected]"
-          Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

.gitignore

@@ -5,3 +5,4 @@
 **.DS_Store
 
 inst/doc
+docs

_pkgdown.yml

@@ -1,47 +1,4 @@
-destination: docs
-
-reference:
-- title: Removing individual participant data from models
-  contents:
-  - strip_rawdata
-  - strip_rawdata.gam
-  - strip_rawdata.gamm
-  - strip_rawdata.list
-  - print.striprawdata
-  - summary.striprawdata
-
-- title: Meta-analysis
-  contents:
-  - metagam
-  - plot.metagam
-  - plot_dominance
-  - plot_heterogeneity
-  - plot_between_study_sd
-  - print.metagam
-  - print.summary.metagam
-  - summary.metagam
-
-- title: Pacakge overview
-  contents:
-  - metagam-package
-
-
-
-navbar:
-  type: default
-  left:
-  - text: Reference
-    href: reference/index.html
-  - text: Articles
-    menu:
-    - text: Introduction
-      href: articles/introduction.html
-    - text: Dominance analysis
-      href: articles/dominance.html
-    - text: Heterogeneity analysis
-      href: articles/heterogeneity.html
-    - text: Multivariate smooth terms
-      href: articles/multivariate.html
-    - text: Simultaneous confidence intervals and p-values
-      href: articles/pvals.html
+url: https://lifebrain.github.io/metagam/
+template:
+  bootstrap: 5