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add image links and alt text
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metazool committed Jul 29, 2024
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1 change: 1 addition & 0 deletions .github/workflows/pytest_coverage.yml
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on:
pull_request:
branches: [ "main" ]
paths: "cyto_ml"

jobs:
tests:
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27 changes: 27 additions & 0 deletions docs/flowcam/index.md
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Expand Up @@ -8,3 +8,30 @@ title: Plankton ML - FlowCam walkthrough

# FlowCam walkthrough

Visit to the FlowCam instrument in Lancaster on 25/07/2024

# Image Gallery

![Contents of a sample jar, plankton suspended in ether](20240725_154135.jpg)

![Sample jars marked with site, date, and depth](20240725_154320.jpg)

![Window display of print-outs of plankton genus with identifying shapes and features](20240725_154812.jpg)

![Ports available on the back of the FlowCam instrument's integrated PC](20240725_155207.jpg)

![Example of the file naming convention with embedded metadata](20240725_155433.jpg)

![Collaged images showing the onboard edge detection function](20240725_161537.jpg)

![Blurred view of interesting metrics derived from the edge detection](20240725_161806.jpg)

![A page of the output once it has stopped showing blank images](20240725_162442.jpg)

![Binary masks stored with the intermediate images](20240725_163521.jpg)

![Short video of the FlowCam in action, stream through the device on the right, output of object detection on the left](YouCut_20240729_123745260.mp4)

![Short video of the sampling method with a narrative about plankton recognition through a researcher's eyes](YouCut_20240729_124027460.mp4)


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