start of changes

NiftyPET · May 6, 2024 · 0f61c76 · 0f61c76
1 parent 0387f62
commit 0f61c76
Show file tree

Hide file tree

Showing 2 changed files with 10 additions and 8 deletions.
diff --git a/niftypet/nipet/include/scanner_sig.h b/niftypet/nipet/include/scanner_sig.h
@@ -63,12 +63,12 @@
 // IMAGE SIZE
 // SZ_I* are image sizes
 // SZ_V* are voxel sizes
-#define SZ_IMX 576
-#define SZ_IMY 576
-#define SZ_IMZ 178
-#define SZ_VOXY 0.1041665f
-#define SZ_VOXZ 0.139f
-#define SZ_VOXZi 7.194245f
+#define SZ_IMX 288
+#define SZ_IMY 288
+#define SZ_IMZ 89
+#define SZ_VOXY 0.208333f
+#define SZ_VOXZ 0.278f
+#define SZ_VOXZi 3.597122f
 #define RSZ_PSF_KRNL 8
 //## end ##//
 //<><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>

diff --git a/niftypet/nipet/lm_inv/hist_inv.py b/niftypet/nipet/lm_inv/hist_inv.py
@@ -52,9 +52,11 @@ def hist_inv(datain, scanner_params, t0=0, t1=0, outpath='', frms=None, use_stor
         log.debug('acquisition duration by integrating time tags is {} sec.'.format(nitag))
 
     elif os.path.isfile(datain['lm_bf']):
+
+        lmpth = str(datain['lm_bf'])
 
         # > gather info about the LM time tags
-        nele, ttags, tpos = lmproc_inv.lminfo(datain['lm_bf'], Cnt)
+        nele, ttags, tpos = lmproc_inv.lminfo(lmpth, Cnt)
 
         # > multiply time tags by 200 microsecond - the reported time increments in list data
         nitag = int((ttags[1] - ttags[0] + 999) / 1000)
@@ -98,7 +100,7 @@ def hist_inv(datain, scanner_params, t0=0, t1=0, outpath='', frms=None, use_stor
 
         # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
         # do the histogramming and processing
-        lmproc_inv.hist(hstout, datain['lm_bf'], t0, t1, txLUT, axLUT, Cnt)
+        lmproc_inv.hist(hstout, lmpth, t0, t1, txLUT, axLUT, Cnt)
         # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
 
         if store: