Merge pull request #285 from OBOFoundry/fix-191

Fix COB:0000035 label in SSSOM mapping
OBOFoundry · Sep 20, 2024 · 185006e · 185006e
2 parents c0cd5d0 + 4526a0b
commit 185006e
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Showing 2 changed files with 74 additions and 8 deletions.
diff --git a/src/ontology/components/cob-to-external.owl b/src/ontology/components/cob-to-external.owl
@@ -36,9 +36,9 @@
      xmlns:semapv="https://w3id.org/semapv/vocab/"
      xmlns:NCBITaxon="http://purl.obolibrary.org/obo/NCBITaxon_">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/cob/components/cob-to-external.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/cob/releases/2024-08-20/components/cob-to-external.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/cob/releases/2024-09-18/components/cob-to-external.owl"/>
         <dc1:license rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://creativecommons.org/publicdomain/zero/1.0/</dc1:license>
-        <owl:versionInfo>2024-08-20</owl:versionInfo>
+        <owl:versionInfo>2024-09-18</owl:versionInfo>
         <sssom:mapping_set_id rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/cob/components/cob-to-external.tsv</sssom:mapping_set_id>
     </owl:Ontology>
 
@@ -1191,7 +1191,7 @@
         <owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
         <sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/ManualMappingCuration"/>
         <sssom:object_label>planned process</sssom:object_label>
-        <sssom:subject_label>planned process</sssom:subject_label>
+        <sssom:subject_label>completely executed planned process</sssom:subject_label>
     </owl:Axiom>
 
 
@@ -1517,13 +1517,13 @@
     <!-- http://purl.obolibrary.org/obo/COB_0000088 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000088">
-        <owl:equivalentClass rdf:resource="http://purl.obolibrary.org/obo/DRON_0000005"/>
+        <owl:equivalentClass rdf:resource="http://purl.obolibrary.org/obo/DRON_00000005"/>
         <rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/CHEBI_23888"/>
     </owl:Class>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/COB_0000088"/>
         <owl:annotatedProperty rdf:resource="http://www.w3.org/2002/07/owl#equivalentClass"/>
-        <owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/DRON_0000005"/>
+        <owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/DRON_00000005"/>
         <sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/ManualMappingCuration"/>
         <sssom:object_label>drug product</sssom:object_label>
         <sssom:subject_label>drug product</sssom:subject_label>
@@ -1717,6 +1717,54 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/COB_0000119 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000119">
+        <owl:equivalentClass rdf:resource="http://purl.obolibrary.org/obo/OBI_0000067"/>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/COB_0000119"/>
+        <owl:annotatedProperty rdf:resource="http://www.w3.org/2002/07/owl#equivalentClass"/>
+        <owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/OBI_0000067"/>
+        <sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/ManualMappingCuration"/>
+        <sssom:object_label>evaluant role</sssom:object_label>
+        <sssom:subject_label>evaluant role</sssom:subject_label>
+    </owl:Axiom>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/COB_0000120 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000120">
+        <owl:equivalentClass rdf:resource="http://purl.obolibrary.org/obo/IAO_0000015"/>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/COB_0000120"/>
+        <owl:annotatedProperty rdf:resource="http://www.w3.org/2002/07/owl#equivalentClass"/>
+        <owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/IAO_0000015"/>
+        <sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/ManualMappingCuration"/>
+        <sssom:object_label>information carrier</sssom:object_label>
+        <sssom:subject_label>information representation</sssom:subject_label>
+    </owl:Axiom>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/COB_0000121 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000121">
+        <owl:equivalentClass rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/COB_0000121"/>
+        <owl:annotatedProperty rdf:resource="http://www.w3.org/2002/07/owl#equivalentClass"/>
+        <owl:annotatedTarget rdf:resource="http://purl.obolibrary.org/obo/IAO_0000109"/>
+        <sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/ManualMappingCuration"/>
+        <sssom:object_label>measurement datum</sssom:object_label>
+        <sssom:subject_label>measurement datum</sssom:subject_label>
+    </owl:Axiom>
+
+
+
     <!-- http://purl.obolibrary.org/obo/COB_0000123 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/COB_0000123">
@@ -1749,9 +1797,9 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/DRON_0000005 -->
+    <!-- http://purl.obolibrary.org/obo/DRON_00000005 -->
 
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/DRON_0000005"/>
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/DRON_00000005"/>
 
 
 
@@ -1819,6 +1867,12 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/IAO_0000015 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000015"/>
+
+
+
     <!-- http://purl.obolibrary.org/obo/IAO_0000027 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000027"/>
@@ -1843,6 +1897,12 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/IAO_0000109 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000109"/>
+
+
+
     <!-- http://purl.obolibrary.org/obo/IAO_0000310 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000310"/>
@@ -1905,6 +1965,12 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/OBI_0000067 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000067"/>
+
+
+
     <!-- http://purl.obolibrary.org/obo/OBI_0000070 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000070"/>

diff --git a/src/ontology/components/cob-to-external.tsv b/src/ontology/components/cob-to-external.tsv
@@ -66,7 +66,7 @@ COB:0000031	immaterial entity	owl:equivalentClass	BFO:0000141	immaterial entity
 COB:0000032	geographical location	rdfs:subClassOf	owl:Thing	owl:Thing		semapv:ManualMappingCuration
 COB:0000033	realizable	owl:equivalentClass	BFO:0000017	realizable entity	.	semapv:ManualMappingCuration
 COB:0000034	process	owl:equivalentClass	BFO:0000015	process	.	semapv:ManualMappingCuration
-COB:0000035	planned process	owl:equivalentClass	OBI:0000011	planned process	.	semapv:ManualMappingCuration
+COB:0000035	completely executed planned process	owl:equivalentClass	OBI:0000011	planned process	.	semapv:ManualMappingCuration
 COB:0000037	biological process	owl:equivalentClass	GO:0008150	biological process	.	semapv:ManualMappingCuration
 COB:0000038	gene product or complex activity	owl:equivalentClass	GO:0003674	molecular function	.	semapv:ManualMappingCuration
 COB:0000042	monoatomic ion	owl:equivalentClass	CHEBI:24867	monoatomic ion	.	semapv:ManualMappingCuration