cmd check fixes and version bump

PavlidisLab · Feb 10, 2024 · d942db1 · d942db1
1 parent 88c1b02
commit d942db1
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Showing 4 changed files with 8 additions and 3 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: gemma.R
 Title: A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses
-Version: 2.1.2
+Version: 2.9.0
 Authors@R: 
     c(person(given = "Javier", family = "Castillo-Arnemann", 
              role = c("aut"), email = "[email protected]",
@@ -60,7 +60,6 @@ Suggests:
     pheatmap,
     viridis,
     poolr,
-    digest,
     kableExtra
 Config/testthat/edition: 2
 VignetteBuilder: knitr

diff --git a/R/convenience.R b/R/convenience.R
@@ -797,6 +797,8 @@ filter_properties <- function(){
 #' these children for any number of terms, including all children
 #' and the terms itself in the output vector
 #' 
+#' @param terms An array of terms
+#' 
 #' @return An array containing descendends of the annotation terms, including
 #' the terms themselves
 #' 

diff --git a/R/gemma.R.R b/R/gemma.R.R
@@ -45,4 +45,5 @@ utils::globalVariables(c("platform.ID", "analysis.ID", "analysis.Threshold", "ba
                          "resultIds", "stats.DE", "stats.Down", "stats.Up", "subsetFactor.category", 
                          "subsetFactor.categoryURI", "subsetFactor.Enabled", "subsetFactor.factorValue", 
                          "subsetFactor.factorValueURI", "valueUri", "category", 
-                         "categoryURI", "experimental.factorValue","value","contrast.ID","%$%",'baseline.factors'))
+                         "categoryURI", "experimental.factorValue","value",
+                         "contrast.ID","%$%",'baseline.factors','setting'))
diff --git a/man/get_child_terms.Rd b/man/get_child_terms.Rd