Final Release

List of known issues:

• Sometimes, when clicking on the minimap, the application zooms all the way in.
• Some Annotations can't be reached due to a stackOverFlow due to the complexity of TB328 (is caught by a pop-up).
• Saving a selection after text filter only save those in view. It does not keep track of the rest of your selection.
• When panning the edges can jump a little in a odd manner.
• Viewing a lot (200+) genomes in rainbow view causes panning and zooming to lag.

Before you start

• Please remove all existing .db and .txt-files from the folder the .jar is saved before you start (may be conflicting), or save the jar in a new empty folder.

Final Report

Merge pull request #271 from ProgrammingLife2017/resetGraphInfo

Reset node information when loading new graph

Context Deliverable

List of known issues:

• Sometimes, when clicking on the minimap, the application zooms all the way in.

Before you start

• Please remove all existing .db and .txt-files from the folder the .jar is saved before you start (may be conflicting), or save the jar in a new empty folder.

SE Release

Please note that our GUI elements are not tested in our programme itself but in a seperate document where we define user tests that either pass or fail. The document is in the deliverables folder and is called "User Stories tests.pdf"

Milestones Week 6

List of known issues:

• pg canvas token error; happens very randomly and we don't know the cause.
• Sometimes loading a new subgraph stops loading, zooming sometimes fixes this.

Before you start

• Please remove all existing .db and .txt-files from the folder the .jar is saved before you start (may be conflicting)

Final Report [Draft]

The final report can be found in the deliverables/drafts folder. The file is named: FinalReportdraft.pdf.
Or just download the attachment below.

Milestone 5

List of known issues:

• pg canvas token error; happens very randomly and we don't know the cause.
• Sometimes we can't zoom out if goto node is used.
• Sometimes when you load the graph for the first time the edges don't draw.
• BufferOverflow error/heapsize error; fixed by running with -Xmx2g
• Sometimes the graph stop loading, zooming fixes this.

Before you start

• Please remove all existing .db and .txt-files from the folder the .jar is saved before you start (may be conflicting)
• run the application with java -jar -Xmx2g <.jar file>

Working for Mac

List of Known Issues

• When loading a second file, the first file sometimes glitches through the graph on zooming.
• Edge Thickness is not applied to the dummy nodes.

Before you start

• Please remove all existing .db and .txt-files from the folder the .jar is saved before you start (may be conflicting)

Dynamite and Butterflies Milestone 4

List of Known Issues

• When loading a second file, the first file sometimes glitches through the graph on zooming.
• On mac the application doesn't work. (This may be fixed, but we can't test this).
• Edge Thickness is not applied to the dummy nodes.

Before you start

• Please remove all existing .db and .txt-files from the folder the .jar is saved before you start (may be conflicting)

Dynamite and Butterflies Milestone 3

Before you start

When opening the current release for the first time, there might be some problems with the database files already on your computer. To fix this, please delete those files once (they can be found in the folder that also holds you .jar file).