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Ia 300 #911

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merged 11 commits into from
Nov 21, 2023
Merged

Ia 300 #911

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84061ce
enhancing current export to fill in new message type
neildsouth Nov 1, 2023
616beee
new externalApp Queue
neildsouth Nov 14, 2023
69758c1
fixing up projects and tests
neildsouth Nov 14, 2023
ac06ed4
change Deliverylimit to 3
neildsouth Nov 15, 2023
1726d6b
fixups from e to e
neildsouth Nov 15, 2023
ed574e6
merge in
neildsouth Nov 15, 2023
844a987
fix up tests
neildsouth Nov 15, 2023
81d1bec
change docker-deploy to match migs passwords
neildsouth Nov 15, 2023
fa5e7be
change to match mig passwords
neildsouth Nov 15, 2023
ccd774c
ignoring test for now, works locally
neildsouth Nov 16, 2023
96acd8e
ignoring test for now, works locally
neildsouth Nov 16, 2023
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7 changes: 7 additions & 0 deletions src/Common/Configuration/MessageBrokerConfigurationKeys.cs
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Expand Up @@ -91,5 +91,12 @@ public class MessageBrokerConfigurationKeys

[ConfigurationKeyName("artifactrecieved")]
public string ArtifactRecieved { get; set; } = "md.workflow.artifactrecieved";

/// <summary>
/// Gets or sets the topic for publishing export requests.
/// Defaults to `md_export_request`.
/// </summary>
[ConfigurationKeyName("externalAppRequest")]
public string ExternalAppRequest { get; set; } = "md.externalapp.request";
}
}
2 changes: 1 addition & 1 deletion src/Common/Configuration/Monai.Deploy.WorkflowManager.Common.Configuration.csproj
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Expand Up @@ -31,7 +31,7 @@
</ItemGroup>

<ItemGroup>
<PackageReference Include="Monai.Deploy.Messaging" Version="1.0.4" />
<PackageReference Include="Monai.Deploy.Messaging" Version="1.0.5-rc0006" />
<PackageReference Include="Monai.Deploy.Storage" Version="0.2.18" />
</ItemGroup>

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6 changes: 3 additions & 3 deletions src/Common/Configuration/packages.lock.json
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Expand Up @@ -4,9 +4,9 @@
"net6.0": {
"Monai.Deploy.Messaging": {
"type": "Direct",
"requested": "[1.0.4, )",
"resolved": "1.0.4",
"contentHash": "K6RrbDh7upokvt+sKuKEhQ+B1Xj46DF4sHxqwE6ymZazwmRULzsD0u/1IeDDJCGuRs3iG64QWwCt32j30PSZLg==",
"requested": "[1.0.5-rc0006, )",
"resolved": "1.0.5-rc0006",
"contentHash": "Yr6Ix8AeKdciz7t9aeteYuDAiNpmv3FmpF9bvdvjVh46gBazf+HBdvXdbWWXgzNTd3yevsQGBKazQXN9ecqwog==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
Expand Down
6 changes: 3 additions & 3 deletions src/Common/Miscellaneous/packages.lock.json
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Expand Up @@ -146,8 +146,8 @@
},
"Monai.Deploy.Messaging": {
"type": "Transitive",
"resolved": "1.0.4",
"contentHash": "K6RrbDh7upokvt+sKuKEhQ+B1Xj46DF4sHxqwE6ymZazwmRULzsD0u/1IeDDJCGuRs3iG64QWwCt32j30PSZLg==",
"resolved": "1.0.5-rc0006",
"contentHash": "Yr6Ix8AeKdciz7t9aeteYuDAiNpmv3FmpF9bvdvjVh46gBazf+HBdvXdbWWXgzNTd3yevsQGBKazQXN9ecqwog==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
Expand Down Expand Up @@ -236,7 +236,7 @@
"monai.deploy.workflowmanager.common.configuration": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[1.0.4, )",
"Monai.Deploy.Messaging": "[1.0.5-rc0006, )",
"Monai.Deploy.Storage": "[0.2.18, )"
}
}
Expand Down
3 changes: 1 addition & 2 deletions src/TaskManager/API/Monai.Deploy.WorkflowManager.TaskManager.API.csproj
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Expand Up @@ -39,9 +39,8 @@


<ItemGroup>
<PackageReference Include="Monai.Deploy.Messaging" Version="1.0.4" />
<PackageReference Include="Monai.Deploy.Messaging" Version="1.0.5-rc0006" />
<PackageReference Include="Mongo.Migration" Version="3.1.4" />
<PackageReference Include="MongoDB.Bson" Version="2.21.0" />
</ItemGroup>

</Project>
6 changes: 3 additions & 3 deletions src/TaskManager/API/packages.lock.json
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Expand Up @@ -4,9 +4,9 @@
"net6.0": {
"Monai.Deploy.Messaging": {
"type": "Direct",
"requested": "[1.0.4, )",
"resolved": "1.0.4",
"contentHash": "K6RrbDh7upokvt+sKuKEhQ+B1Xj46DF4sHxqwE6ymZazwmRULzsD0u/1IeDDJCGuRs3iG64QWwCt32j30PSZLg==",
"requested": "[1.0.5-rc0006, )",
"resolved": "1.0.5-rc0006",
"contentHash": "Yr6Ix8AeKdciz7t9aeteYuDAiNpmv3FmpF9bvdvjVh46gBazf+HBdvXdbWWXgzNTd3yevsQGBKazQXN9ecqwog==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
Expand Down
6 changes: 3 additions & 3 deletions src/TaskManager/Database/packages.lock.json
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Expand Up @@ -247,8 +247,8 @@
},
"Monai.Deploy.Messaging": {
"type": "Transitive",
"resolved": "1.0.4",
"contentHash": "K6RrbDh7upokvt+sKuKEhQ+B1Xj46DF4sHxqwE6ymZazwmRULzsD0u/1IeDDJCGuRs3iG64QWwCt32j30PSZLg==",
"resolved": "1.0.5-rc0006",
"contentHash": "Yr6Ix8AeKdciz7t9aeteYuDAiNpmv3FmpF9bvdvjVh46gBazf+HBdvXdbWWXgzNTd3yevsQGBKazQXN9ecqwog==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
Expand Down Expand Up @@ -684,7 +684,7 @@
"monai.deploy.workflowmanager.taskmanager.api": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[1.0.4, )",
"Monai.Deploy.Messaging": "[1.0.5-rc0006, )",
"Mongo.Migration": "[3.1.4, )",
"MongoDB.Bson": "[2.21.0, )"
}
Expand Down
8 changes: 4 additions & 4 deletions src/TaskManager/Plug-ins/AideClinicalReview/packages.lock.json
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Expand Up @@ -258,8 +258,8 @@
},
"Monai.Deploy.Messaging": {
"type": "Transitive",
"resolved": "1.0.4",
"contentHash": "K6RrbDh7upokvt+sKuKEhQ+B1Xj46DF4sHxqwE6ymZazwmRULzsD0u/1IeDDJCGuRs3iG64QWwCt32j30PSZLg==",
"resolved": "1.0.5-rc0006",
"contentHash": "Yr6Ix8AeKdciz7t9aeteYuDAiNpmv3FmpF9bvdvjVh46gBazf+HBdvXdbWWXgzNTd3yevsQGBKazQXN9ecqwog==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
Expand Down Expand Up @@ -733,7 +733,7 @@
"monai.deploy.workflowmanager.common.configuration": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[1.0.4, )",
"Monai.Deploy.Messaging": "[1.0.5-rc0006, )",
"Monai.Deploy.Storage": "[0.2.18, )"
}
},
Expand All @@ -747,7 +747,7 @@
"monai.deploy.workflowmanager.taskmanager.api": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[1.0.4, )",
"Monai.Deploy.Messaging": "[1.0.5-rc0006, )",
"Mongo.Migration": "[3.1.4, )",
"MongoDB.Bson": "[2.21.0, )"
}
Expand Down
8 changes: 4 additions & 4 deletions src/TaskManager/Plug-ins/Argo/packages.lock.json
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Expand Up @@ -368,8 +368,8 @@
},
"Monai.Deploy.Messaging": {
"type": "Transitive",
"resolved": "1.0.4",
"contentHash": "K6RrbDh7upokvt+sKuKEhQ+B1Xj46DF4sHxqwE6ymZazwmRULzsD0u/1IeDDJCGuRs3iG64QWwCt32j30PSZLg==",
"resolved": "1.0.5-rc0006",
"contentHash": "Yr6Ix8AeKdciz7t9aeteYuDAiNpmv3FmpF9bvdvjVh46gBazf+HBdvXdbWWXgzNTd3yevsQGBKazQXN9ecqwog==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
Expand Down Expand Up @@ -871,7 +871,7 @@
"monai.deploy.workflowmanager.common.configuration": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[1.0.4, )",
"Monai.Deploy.Messaging": "[1.0.5-rc0006, )",
"Monai.Deploy.Storage": "[0.2.18, )"
}
},
Expand All @@ -885,7 +885,7 @@
"monai.deploy.workflowmanager.taskmanager.api": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[1.0.4, )",
"Monai.Deploy.Messaging": "[1.0.5-rc0006, )",
"Mongo.Migration": "[3.1.4, )",
"MongoDB.Bson": "[2.21.0, )"
}
Expand Down
9 changes: 3 additions & 6 deletions src/TaskManager/TaskManager/Monai.Deploy.WorkflowManager.TaskManager.csproj
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Expand Up @@ -58,12 +58,11 @@
<ItemGroup>
<PackageReference Include="AspNetCore.HealthChecks.MongoDb" Version="6.0.2" />
<PackageReference Include="Microsoft.AspNetCore.Mvc.NewtonsoftJson" Version="6.0.22" />
<PackageReference Include="Monai.Deploy.Messaging" Version="1.0.5-rc0006" />
<PackageReference Include="Monai.Deploy.Messaging.RabbitMQ" Version="1.0.5-rc0006" />
<PackageReference Include="Monai.Deploy.Storage.MinIO" Version="0.2.18">
<TreatAsUsed>true</TreatAsUsed>
</PackageReference>
<PackageReference Include="Monai.Deploy.Messaging.RabbitMQ" Version="1.0.4">
<TreatAsUsed>true</TreatAsUsed>
</PackageReference>
<PackageReference Include="Monai.Deploy.Security" Version="0.1.3" />
<PackageReference Include="NLog" Version="5.2.4">
<TreatAsUsed>true</TreatAsUsed>
Expand All @@ -87,9 +86,7 @@
</ProjectReference>
<ProjectReference Include="..\Plug-ins\Argo\Monai.Deploy.WorkflowManager.TaskManager.Argo.csproj" />
<ProjectReference Include="..\Plug-ins\Docker\Monai.Deploy.WorkflowManager.TaskManager.Docker.csproj" />
<ProjectReference Include="..\Plug-ins\Email\Monai.Deploy.WorkflowManager.TaskManager.Email.csproj">
<TreatAsUsed>true</TreatAsUsed>
</ProjectReference>
<ProjectReference Include="..\Plug-ins\Email\Monai.Deploy.WorkflowManager.TaskManager.Email.csproj" />
</ItemGroup>

<ItemGroup>
Expand Down
2 changes: 1 addition & 1 deletion src/TaskManager/TaskManager/appsettings.json
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Expand Up @@ -94,7 +94,7 @@
"virtualHost": "monaideploy",
"exchange": "monaideploy",
"deadLetterExchange": "deadLetterExchange",
"deliveryLimit": "5",
"deliveryLimit": "3",
"requeueDelay": "0"
},
"subscriberServiceAssemblyName": "Monai.Deploy.Messaging.RabbitMQ.RabbitMQMessageSubscriberService, Monai.Deploy.Messaging.RabbitMQ",
Expand Down
35 changes: 18 additions & 17 deletions src/TaskManager/TaskManager/packages.lock.json
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Expand Up @@ -23,13 +23,25 @@
"Newtonsoft.Json.Bson": "1.0.2"
}
},
"Monai.Deploy.Messaging": {
"type": "Direct",
"requested": "[1.0.5-rc0006, )",
"resolved": "1.0.5-rc0006",
"contentHash": "Yr6Ix8AeKdciz7t9aeteYuDAiNpmv3FmpF9bvdvjVh46gBazf+HBdvXdbWWXgzNTd3yevsQGBKazQXN9ecqwog==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
"Newtonsoft.Json": "13.0.3",
"System.IO.Abstractions": "17.2.3"
}
},
"Monai.Deploy.Messaging.RabbitMQ": {
"type": "Direct",
"requested": "[1.0.4, )",
"resolved": "1.0.4",
"contentHash": "2llZ4XbE91Km2Q+JEKSSeTyhZLWRq3lN5xQ6+Klqow3V8SXBAlOQQ+b5//BEm6x0QdoycFberMOVAsZYYM0j7g==",
"requested": "[1.0.5-rc0006, )",
"resolved": "1.0.5-rc0006",
"contentHash": "luSfBhU4hFwyGk7SS05sfKHwxcCYjXimfmaTjNDjFKKjIYbd3IPm8lYDPSiszbZB53jpgNvYDy+aWJY8YlVXZg==",
"dependencies": {
"Monai.Deploy.Messaging": "1.0.4",
"Monai.Deploy.Messaging": "1.0.5-rc0006",
"Polly": "7.2.4",
"RabbitMQ.Client": "6.5.0"
}
Expand Down Expand Up @@ -535,17 +547,6 @@
"System.Reactive.Linq": "5.0.0"
}
},
"Monai.Deploy.Messaging": {
"type": "Transitive",
"resolved": "1.0.4",
"contentHash": "K6RrbDh7upokvt+sKuKEhQ+B1Xj46DF4sHxqwE6ymZazwmRULzsD0u/1IeDDJCGuRs3iG64QWwCt32j30PSZLg==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
"Newtonsoft.Json": "13.0.3",
"System.IO.Abstractions": "17.2.3"
}
},
"Monai.Deploy.Storage": {
"type": "Transitive",
"resolved": "0.2.18",
Expand Down Expand Up @@ -1138,7 +1139,7 @@
"monai.deploy.workflowmanager.common.configuration": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[1.0.4, )",
"Monai.Deploy.Messaging": "[1.0.5-rc0006, )",
"Monai.Deploy.Storage": "[0.2.18, )"
}
},
Expand All @@ -1160,7 +1161,7 @@
"monai.deploy.workflowmanager.taskmanager.api": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[1.0.4, )",
"Monai.Deploy.Messaging": "[1.0.5-rc0006, )",
"Mongo.Migration": "[3.1.4, )",
"MongoDB.Bson": "[2.21.0, )"
}
Expand Down
2 changes: 2 additions & 0 deletions src/WorkflowManager/Contracts/Constants/TaskTypeConstants.cs
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Expand Up @@ -23,5 +23,7 @@ public static class TaskTypeConstants
public const string ExportTask = "export";

public const string ExternalAppTask = "remote_app_execution";

public const string ExportHl7Task = "export_hl7";
}
}
2 changes: 1 addition & 1 deletion src/WorkflowManager/Contracts/Monai.Deploy.WorkflowManager.Contracts.csproj
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Expand Up @@ -38,7 +38,7 @@


<ItemGroup>
<PackageReference Include="Monai.Deploy.Messaging" Version="1.0.4" />
<PackageReference Include="Monai.Deploy.Messaging" Version="1.0.5-rc0006" />
<PackageReference Include="Mongo.Migration" Version="3.1.4" />
<PackageReference Include="MongoDB.Bson" Version="2.21.0" />
</ItemGroup>
Expand Down
3 changes: 1 addition & 2 deletions src/WorkflowManager/Database/Repositories/ArtifactsRepository.cs
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Expand Up @@ -22,7 +22,6 @@
using Microsoft.Extensions.Logging;
using Microsoft.Extensions.Options;
using Monai.Deploy.WorkflowManager.Common.Database.Options;
using MongoDB.Bson;
using MongoDB.Driver;
using Artifact = Monai.Deploy.Messaging.Common.Artifact;

Expand All @@ -46,7 +45,7 @@

public class ArtifactReceivedItems
{
public string Id { get; set; }
public string Id { get; set; } = string.Empty;

/// <summary>
/// Gets or Sets WorkflowInstanceId.
Expand Down Expand Up @@ -191,7 +190,7 @@
.ConfigureAwait(false);
}
}
catch (Exception ex)

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{

throw;
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6 changes: 3 additions & 3 deletions src/WorkflowManager/Database/packages.lock.json
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Expand Up @@ -269,8 +269,8 @@
},
"Monai.Deploy.Messaging": {
"type": "Transitive",
"resolved": "1.0.4",
"contentHash": "K6RrbDh7upokvt+sKuKEhQ+B1Xj46DF4sHxqwE6ymZazwmRULzsD0u/1IeDDJCGuRs3iG64QWwCt32j30PSZLg==",
"resolved": "1.0.5-rc0006",
"contentHash": "Yr6Ix8AeKdciz7t9aeteYuDAiNpmv3FmpF9bvdvjVh46gBazf+HBdvXdbWWXgzNTd3yevsQGBKazQXN9ecqwog==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
Expand Down Expand Up @@ -685,7 +685,7 @@
"monai.deploy.workflowmanager.contracts": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[1.0.4, )",
"Monai.Deploy.Messaging": "[1.0.5-rc0006, )",
"Mongo.Migration": "[3.1.4, )",
"MongoDB.Bson": "[2.21.0, )"
}
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6 changes: 3 additions & 3 deletions src/WorkflowManager/Logging/packages.lock.json
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Expand Up @@ -210,8 +210,8 @@
},
"Monai.Deploy.Messaging": {
"type": "Transitive",
"resolved": "1.0.4",
"contentHash": "K6RrbDh7upokvt+sKuKEhQ+B1Xj46DF4sHxqwE6ymZazwmRULzsD0u/1IeDDJCGuRs3iG64QWwCt32j30PSZLg==",
"resolved": "1.0.5-rc0006",
"contentHash": "Yr6Ix8AeKdciz7t9aeteYuDAiNpmv3FmpF9bvdvjVh46gBazf+HBdvXdbWWXgzNTd3yevsQGBKazQXN9ecqwog==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
Expand Down Expand Up @@ -641,7 +641,7 @@
"monai.deploy.workflowmanager.contracts": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[1.0.4, )",
"Monai.Deploy.Messaging": "[1.0.5-rc0006, )",
"Mongo.Migration": "[3.1.4, )",
"MongoDB.Bson": "[2.21.0, )"
}
Expand Down
10 changes: 5 additions & 5 deletions src/WorkflowManager/PayloadListener/packages.lock.json
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Expand Up @@ -270,8 +270,8 @@
},
"Monai.Deploy.Messaging": {
"type": "Transitive",
"resolved": "1.0.4",
"contentHash": "K6RrbDh7upokvt+sKuKEhQ+B1Xj46DF4sHxqwE6ymZazwmRULzsD0u/1IeDDJCGuRs3iG64QWwCt32j30PSZLg==",
"resolved": "1.0.5-rc0006",
"contentHash": "Yr6Ix8AeKdciz7t9aeteYuDAiNpmv3FmpF9bvdvjVh46gBazf+HBdvXdbWWXgzNTd3yevsQGBKazQXN9ecqwog==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
Expand Down Expand Up @@ -779,7 +779,7 @@
"monai.deploy.workflowmanager.common.configuration": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[1.0.4, )",
"Monai.Deploy.Messaging": "[1.0.5-rc0006, )",
"Monai.Deploy.Storage": "[0.2.18, )"
}
},
Expand All @@ -802,7 +802,7 @@
"monai.deploy.workflowmanager.contracts": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[1.0.4, )",
"Monai.Deploy.Messaging": "[1.0.5-rc0006, )",
"Mongo.Migration": "[3.1.4, )",
"MongoDB.Bson": "[2.21.0, )"
}
Expand Down Expand Up @@ -830,7 +830,7 @@
"Monai.Deploy.WorkflowManager.Logging": "[1.0.0, )"
}
},
"Monai.Deploy.WorkloadManager.WorkflowExecuter": {
"monai.deploy.workloadmanager.workflowexecuter": {
"type": "Project",
"dependencies": {
"Monai.Deploy.WorkflowManager.Common": "[1.0.0, )",
Expand Down
8 changes: 4 additions & 4 deletions src/WorkflowManager/Services/packages.lock.json
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Expand Up @@ -249,8 +249,8 @@
},
"Monai.Deploy.Messaging": {
"type": "Transitive",
"resolved": "1.0.4",
"contentHash": "K6RrbDh7upokvt+sKuKEhQ+B1Xj46DF4sHxqwE6ymZazwmRULzsD0u/1IeDDJCGuRs3iG64QWwCt32j30PSZLg==",
"resolved": "1.0.5-rc0006",
"contentHash": "Yr6Ix8AeKdciz7t9aeteYuDAiNpmv3FmpF9bvdvjVh46gBazf+HBdvXdbWWXgzNTd3yevsQGBKazQXN9ecqwog==",
"dependencies": {
"Ardalis.GuardClauses": "4.1.1",
"Microsoft.Extensions.Diagnostics.HealthChecks": "6.0.21",
Expand Down Expand Up @@ -733,14 +733,14 @@
"monai.deploy.workflowmanager.common.configuration": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[1.0.4, )",
"Monai.Deploy.Messaging": "[1.0.5-rc0006, )",
"Monai.Deploy.Storage": "[0.2.18, )"
}
},
"monai.deploy.workflowmanager.contracts": {
"type": "Project",
"dependencies": {
"Monai.Deploy.Messaging": "[1.0.4, )",
"Monai.Deploy.Messaging": "[1.0.5-rc0006, )",
"Mongo.Migration": "[3.1.4, )",
"MongoDB.Bson": "[2.21.0, )"
}
Expand Down
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