Merge branch 'development'

CHANGELOG.md

@@ -9,9 +9,62 @@ This project <em>does not yet</em> adheres to [Semantic Versioning](https://semv
 
 \-
 
+## [0.33.0] - 2023-05-19
+
+### Added
+
+- Basic RCC5 support (= OtuRelationship) [#257]
+- Unified filter to observation matrix integration [#3415]
+- Biological associations can now be depicted
+- Data depiction facets
+- Biological associations filter annotation-based facets
+- New stage-only staged image type [#3400]
+- New left-t stage layout [#3367]
+- `Add` button to add biological associations from `Related` modal in new biological associations task
+- ImportDataset facet in Filter collection objects [#3419]
+
+### Changed
+
+- Updated author and year string for family-group names
+- Recent predicate list
+- Recent languages list
+- People autocomplete
+- GeographicArea autocomplete (exact match on alternate value)
+
+### Fixed
+
+- Nomen (was "castor") batch load was not assigning parent correctly [#3409]
+- Source and People API endpoints don't try to authenticate [#3407]
+- Date range in filter Collection Object not being applied [#3418]
+- Year import in NOMEN (was "castor") import [#3411]
+- PublicContent missing is_community? method preventing reporting.
+- Loans dashboard fails to render when no loans are present 
+- Staged image processing when boundaries fail to be calculated and calculate incorrectly 
+- Bug with engine in interactive keys [#3416]
+- Collection object classification summary [#3412]
+- BibTeX typo [#3408]
+- Includes `type material` and `type material observations` don't work in Filter images
+- Changing the number of items per page or the page shows loan items that are not from the current loan in New/edit loan task [#3413]
+- Sort by name gives an wrong order in filter nomenclature task
+
+[#257]: https://github.com/SpeciesFileGroup/taxonworks/issues/257
+[#3367]: https://github.com/SpeciesFileGroup/taxonworks/issues/3367
+[#3400]: https://github.com/SpeciesFileGroup/taxonworks/issues/3400
+[#3407]: https://github.com/SpeciesFileGroup/taxonworks/issues/3407
+[#3408]: https://github.com/SpeciesFileGroup/taxonworks/issues/3408
+[#3409]: https://github.com/SpeciesFileGroup/taxonworks/issues/3409
+[#3411]: https://github.com/SpeciesFileGroup/taxonworks/issues/3411
+[#3412]: https://github.com/SpeciesFileGroup/taxonworks/issues/3412
+[#3413]: https://github.com/SpeciesFileGroup/taxonworks/issues/3413
+[#3415]: https://github.com/SpeciesFileGroup/taxonworks/issues/3415
+[#3416]: https://github.com/SpeciesFileGroup/taxonworks/issues/3416
+[#3418]: https://github.com/SpeciesFileGroup/taxonworks/issues/3418
+[#3419]: https://github.com/SpeciesFileGroup/taxonworks/issues/3419
+
 ## [0.32.3] - 2023-05-05
 
 ### Added
+
 - Add/move/return collection objects from collection object filter [#3387]
 - Interpretation help for `full name` facet in people filter [#3394]
 - Total individuals to loan show/recipient form [#3398]
@@ -23,6 +76,7 @@ This project <em>does not yet</em> adheres to [Semantic Versioning](https://semv
 - Caption and figure label editable in Depictions list in Radial annotator [#3396]
 
 ### Changed
+
 - Pagination headers are exposed via CORS [#3380]
 - Updated bundle gems
 - Ruby 3.2 is now required as minimum
@@ -33,6 +87,7 @@ This project <em>does not yet</em> adheres to [Semantic Versioning](https://semv
 - Browse OTU biological association table contains related modal
 
 ### Fixed
+
 - Global identifiers not appearing on community data [#3393]
 - Lag in selecting loan items on edit loan [#3399]
 - Collection object was loanable 2x in some cases
@@ -703,11 +758,9 @@ This project <em>does not yet</em> adheres to [Semantic Versioning](https://semv
 - Added 'electronic only' field for the source to flag sources published in electronic only format
 - Default `collectionCode` namespace mappings as falback when `institutionCode`:`collectionCode` mappings do not contain a match in DwC occurrences importer.
 
-### Changed
-
 - Remove search box in observation matrix hub [#3032]
 - Type material form allows multiple type species in comprehensive task. [#2584]
-- Updated Ruby gems.
+- Updated Ruby gems.Yes
 - wikidata-client dependency is now fetching from RubyGems rather than custom fork.
 - serrano has been changed to a new custom branch which is identical to official gem except `thor` dependency has been downgraded for TW compatibility.
 - DwC occurrences importer mappings are not sorted by `institutionCode`:`collectionCode`
@@ -3578,7 +3631,8 @@ This project <em>does not yet</em> adheres to [Semantic Versioning](https://semv
 
 [#1532]: https://github.com/SpeciesFileGroup/taxonworks/issues/1532
 
-[unreleased]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.32.3...development
+[unreleased]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.33.0...development
+[0.33.0]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.32.3...v0.33.0
 [0.32.3]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.32.2...v0.32.3
 [0.32.2]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.32.1...v0.32.2
 [0.32.1]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.32.0...v0.32.1

Gemfile

@@ -108,7 +108,7 @@ gem 'ruby-graphviz', '~> 1.2.5', require: false
 
 # "Bio" and SFG gems
 gem 'taxonifi', '~> 0.6.0'
-gem 'sqed', '~>0.7.0'
+gem 'sqed', '~>0.8.1'
 gem 'dwc_agent', '~> 3.0'
 gem 'dwc-archive', github: 'LocoDelAssembly/dwc-archive', branch: 'overhaul' # '~> 1.1', '>= 1.1.2'
 gem 'biodiversity', github: 'GlobalNamesArchitecture/biodiversity', branch: 'pipe_approach' # '~> 5.1', '>= 5.1.1'

Gemfile.lock

@@ -144,7 +144,7 @@ GEM
       public_suffix (>= 2.0.2, < 6.0)
     afm (0.2.2)
     amazing_print (1.4.0)
-    asciidoctor (2.0.18)
+    asciidoctor (2.0.20)
     ast (2.4.2)
     babel-source (5.8.35)
     babel-transpiler (0.7.0)
@@ -164,7 +164,7 @@ GEM
     brakeman (5.4.1)
     builder (3.2.4)
     byebug (11.1.3)
-    capybara (3.39.0)
+    capybara (3.39.1)
       addressable
       matrix
       mini_mime (>= 0.1.3)
@@ -312,9 +312,9 @@ GEM
       parslet
     logical_query_parser (0.3.2)
       treetop (~> 1.6.8)
-    loofah (2.20.0)
+    loofah (2.21.3)
       crass (~> 1.0.2)
-      nokogiri (>= 1.5.9)
+      nokogiri (>= 1.12.0)
     lumberjack (1.2.8)
     mail (2.8.1)
       mini_mime (>= 0.1.1)
@@ -348,9 +348,9 @@ GEM
       net-protocol
     netrc (0.11.0)
     nio4r (2.5.9)
-    nokogiri (1.14.3-x86_64-darwin)
+    nokogiri (1.15.0-x86_64-darwin)
       racc (~> 1.4)
-    nokogiri (1.14.3-x86_64-linux)
+    nokogiri (1.15.0-x86_64-linux)
       racc (~> 1.4)
     notiffany (0.1.3)
       nenv (~> 0.1)
@@ -362,7 +362,7 @@ GEM
     paperclip-meta (3.1.0)
       paperclip (>= 5.0)
     parallel (1.23.0)
-    parallel_tests (4.2.0)
+    parallel_tests (4.2.1)
       parallel
     parser (3.2.2.1)
       ast (~> 2.4.1)
@@ -474,7 +474,7 @@ GEM
       nokogiri
       roo (>= 2.0.0, < 3)
       spreadsheet (> 0.9.0)
-    rouge (4.1.0)
+    rouge (4.1.1)
     rqrcode_core (1.2.0)
     rspec (3.12.0)
       rspec-core (~> 3.12.0)
@@ -502,7 +502,7 @@ GEM
       rspec-support (~> 3.10)
     rspec-support (3.12.0)
     rtesseract (3.1.2)
-    rubocop (1.50.2)
+    rubocop (1.51.0)
       json (~> 2.3)
       parallel (~> 1.10)
       parser (>= 3.2.0.0)
@@ -516,6 +516,8 @@ GEM
       parser (>= 3.2.1.0)
     rubocop-capybara (2.18.0)
       rubocop (~> 1.41)
+    rubocop-factory_bot (2.23.1)
+      rubocop (~> 1.33)
     rubocop-faker (1.1.0)
       faker (>= 2.12.0)
       rubocop (>= 0.82.0)
@@ -526,9 +528,10 @@ GEM
       activesupport (>= 4.2.0)
       rack (>= 1.1)
       rubocop (>= 1.33.0, < 2.0)
-    rubocop-rspec (2.20.0)
+    rubocop-rspec (2.22.0)
       rubocop (~> 1.33)
       rubocop-capybara (~> 2.17)
+      rubocop-factory_bot (~> 2.22)
     ruby-graphviz (1.2.5)
       rexml
     ruby-lsp (0.4.5)
@@ -554,7 +557,7 @@ GEM
       rdoc (>= 5.0)
     seedbank (0.5.0)
       rake (>= 10.0)
-    selenium-webdriver (4.9.0)
+    selenium-webdriver (4.9.1)
       rexml (~> 3.2, >= 3.2.5)
       rubyzip (>= 1.2.2, < 3.0)
       websocket (~> 1.0)
@@ -573,7 +576,7 @@ GEM
       simplecov_json_formatter (~> 0.1)
     simplecov-html (0.12.3)
     simplecov_json_formatter (0.1.4)
-    sorbet-runtime (0.5.10801)
+    sorbet-runtime (0.5.10832)
     spreadsheet (1.3.0)
       ruby-ole
     spring (4.1.1)
@@ -590,7 +593,7 @@ GEM
       actionpack (>= 4.0)
       activesupport (>= 4.0)
       sprockets (>= 3.0.0)
-    sqed (0.7.1)
+    sqed (0.8.1)
       rake (~> 13.0)
       rmagick (~> 4.2)
       rtesseract (~> 3.1)
@@ -603,7 +606,7 @@ GEM
       tins (~> 1.0)
     terrapin (0.6.0)
       climate_control (>= 0.0.3, < 1.0)
-    thor (1.2.1)
+    thor (1.2.2)
     tilt (2.1.0)
     timecop (0.9.6)
     timeliness (0.4.5)
@@ -777,7 +780,7 @@ DEPENDENCIES
   sprockets (~> 3.7.2)
   sprockets-es6 (~> 0.9.2)
   sprockets-rails (~> 3.2.0)
-  sqed (~> 0.7.0)
+  sqed (~> 0.8.1)
   taxonifi (~> 0.6.0)
   term-ansicolor (~> 1.6)
   thor (~> 1.2)