mark internal things as internal

VEuPathDB · Sep 10, 2024 · d749eb1 · d749eb1
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diff --git a/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-blast-n/index.html b/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-blast-n/index.html
diff --git a/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-blast-p/index.html b/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-blast-p/index.html
diff --git a/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-blast-x/index.html b/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-blast-x/index.html
diff --git a/...okka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-cluster-realign/index.html b/...okka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-cluster-realign/index.html
diff --git a/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-cluster/index.html b/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-cluster/index.html
diff --git a/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-d-b-info/index.html b/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-d-b-info/index.html
diff --git a/...okka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-deep-clustering/index.html b/...okka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-deep-clustering/index.html
diff --git a/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-get-seq/index.html b/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-get-seq/index.html
diff --git a/.../v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-greedy-vortex-cover/index.html b/.../v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-greedy-vortex-cover/index.html
diff --git a/...dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-linear-cluster/index.html b/...dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-linear-cluster/index.html
diff --git a/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-make-d-b/index.html b/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-make-d-b/index.html
diff --git a/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-make-index/index.html b/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-make-index/index.html
diff --git a/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-merge-d-a-a/index.html b/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-merge-d-a-a/index.html
diff --git a/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-prep-d-b/index.html b/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-prep-d-b/index.html
diff --git a/...ka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-reassign-clusters/index.html b/...ka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-reassign-clusters/index.html
diff --git a/...v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-recompute-clustering/index.html b/...v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-recompute-clustering/index.html
diff --git a/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-view/index.html b/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/-view/index.html
diff --git a/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/index.html b/docs/dokka/v0.1.0/diamondcli/org.veupathdb.lib.cli.diamond.commands/index.html
@@ -82,7 +82,7 @@ <h2 class="">Types</h2>
                   </span></span></div>
               <div>
                 <div class="title">
-                  <div class="platform-hinted " data-platform-hinted="data-platform-hinted"><div class="content sourceset-dependent-content" data-active="" data-togglable=":dokkaHtml/main"><div class="symbol monospace"><span class="token keyword">interface </span><a href="-blast-n/index.html">BlastN</a> : <a href="-diamond-command-config/index.html">DiamondCommandConfig</a>, <a href="../org.veupathdb.lib.cli.diamond.opts/-advanced-general-option-container/index.html">AdvancedGeneralOptionContainer</a>, <a href="../org.veupathdb.lib.cli.diamond.opts/-advanced-clustering-alignment-option-container/index.html">AdvancedClusteringAlignmentOptionContainer</a>, <a href="../org.veupathdb.lib.cli.diamond.opts/-advanced-query-option-container/index.html">AdvancedQueryOptionContainer</a>, <a href="../org.veupathdb.lib.cli.diamond.opts/-hidden-option-container/index.html">HiddenOptionContainer</a></div></div></div>
+                  <div class="platform-hinted " data-platform-hinted="data-platform-hinted"><div class="content sourceset-dependent-content" data-active="" data-togglable=":dokkaHtml/main"><div class="symbol monospace"><div class="block"><div class="block"><span class="token annotation builtin">@</span><a href="../org.veupathdb.lib.cli.diamond/-diamond-extras/index.html"><span class="token annotation builtin">DiamondExtras</span></a></div></div><span class="token keyword">interface </span><a href="-blast-n/index.html">BlastN</a> : <a href="-diamond-command-config/index.html">DiamondCommandConfig</a>, <a href="../org.veupathdb.lib.cli.diamond.opts/-advanced-general-option-container/index.html">AdvancedGeneralOptionContainer</a>, <a href="../org.veupathdb.lib.cli.diamond.opts/-advanced-clustering-alignment-option-container/index.html">AdvancedClusteringAlignmentOptionContainer</a>, <a href="../org.veupathdb.lib.cli.diamond.opts/-advanced-query-option-container/index.html">AdvancedQueryOptionContainer</a>, <a href="../org.veupathdb.lib.cli.diamond.opts/-hidden-option-container/index.html">HiddenOptionContainer</a></div></div></div>
                 </div>
               </div>
             </div>

diff --git a/...impl/-advanced-general-option-container-impl/-advanced-general-option-container-impl.html b/...impl/-advanced-general-option-container-impl/-advanced-general-option-container-impl.html
diff --git a/...b.lib.cli.diamond.opts.impl/-advanced-general-option-container-impl/file-buffer-size.html b/...b.lib.cli.diamond.opts.impl/-advanced-general-option-container-impl/file-buffer-size.html
diff --git a/...db.lib.cli.diamond.opts.impl/-advanced-general-option-container-impl/ignore-warnings.html b/...db.lib.cli.diamond.opts.impl/-advanced-general-option-container-impl/ignore-warnings.html