ByteBufferOutputStream and HexPrinter are only used by in the

edu.rit.flick.genetics package Since they are only used there, they should sub-package it instead of being at such a high level in the project.
aaiezza · May 5, 2016 · be90bb1 · be90bb1
1 parent 5b984ac
commit be90bb1
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Showing 7 changed files with 8 additions and 8 deletions.
diff --git a/src/edu/rit/flick/genetics/FastFileDeflator.java b/src/edu/rit/flick/genetics/FastFileDeflator.java
@@ -30,7 +30,7 @@
 
 import edu.rit.flick.FileDeflator;
 import edu.rit.flick.config.Configuration;
-import edu.rit.util.ByteBufferOutputStream;
+import edu.rit.flick.genetics.util.ByteBufferOutputStream;
 import it.unimi.dsi.io.ByteBufferInputStream;
 import net.lingala.zip4j.core.ZipFile;
 import net.lingala.zip4j.exception.ZipException;

diff --git a/src/edu/rit/flick/genetics/FastFileInflator.java b/src/edu/rit/flick/genetics/FastFileInflator.java
@@ -29,7 +29,7 @@
 
 import edu.rit.flick.FileInflator;
 import edu.rit.flick.config.Configuration;
-import edu.rit.util.ByteBufferOutputStream;
+import edu.rit.flick.genetics.util.ByteBufferOutputStream;
 import it.unimi.dsi.io.ByteBufferInputStream;
 import it.unimi.dsi.lang.MutableString;
 import net.lingala.zip4j.core.ZipFile;

diff --git a/src/edu/rit/flick/genetics/FastaFileDeflator.java b/src/edu/rit/flick/genetics/FastaFileDeflator.java
@@ -17,7 +17,7 @@
 import java.util.Collections;
 import java.util.List;
 
-import edu.rit.util.ByteBufferOutputStream;
+import edu.rit.flick.genetics.util.ByteBufferOutputStream;
 
 /**
  * @author Alex Aiezza

diff --git a/src/edu/rit/flick/genetics/FastaFileInflator.java b/src/edu/rit/flick/genetics/FastaFileInflator.java
@@ -15,7 +15,7 @@
 import java.util.Scanner;
 import java.util.StringTokenizer;
 
-import edu.rit.util.HexPrinter;
+import edu.rit.flick.genetics.util.HexPrinter;
 
 /**
  * @author Alex Aiezza

diff --git a/src/edu/rit/flick/genetics/FastqFileDeflator.java b/src/edu/rit/flick/genetics/FastqFileDeflator.java
@@ -18,8 +18,8 @@
 import java.util.Collections;
 import java.util.List;
 
-import edu.rit.util.ByteBufferOutputStream;
-import edu.rit.util.HexPrinter;
+import edu.rit.flick.genetics.util.ByteBufferOutputStream;
+import edu.rit.flick.genetics.util.HexPrinter;
 
 /**
  * @author Alex Aiezza

diff --git a/src/edu/rit/util/ByteBufferOutputStream.java → ...genetics/util/ByteBufferOutputStream.java b/src/edu/rit/util/ByteBufferOutputStream.java → ...genetics/util/ByteBufferOutputStream.java
@@ -4,7 +4,7 @@
  *  See the LICENSE for the specific language governing permissions and
  *  limitations under the License provided with this project.
  */
-package edu.rit.util;
+package edu.rit.flick.genetics.util;
 
 import java.io.File;
 import java.io.IOException;

diff --git a/src/edu/rit/util/HexPrinter.java → ...u/rit/flick/genetics/util/HexPrinter.java b/src/edu/rit/util/HexPrinter.java → ...u/rit/flick/genetics/util/HexPrinter.java
@@ -4,7 +4,7 @@
  *  See the LICENSE for the specific language governing permissions and
  *  limitations under the License provided with this project.
  */
-package edu.rit.util;
+package edu.rit.flick.genetics.util;
 
 import static java.lang.Integer.toHexString;