code block wrap

arpcard · Feb 6, 2024 · 0a41d1f · 0a41d1f
1 parent 0602202
commit 0a41d1f
Showing 1 changed file with 5 additions and 2 deletions.
diff --git a/docs/rgi_main.rst b/docs/rgi_main.rst
@@ -155,7 +155,8 @@ The default settings for RGI main will include Perfect or Strict predictions via
 
    .. code-block:: sh
 
-      rgi main --input_sequence /path/to/nucleotide_input.fasta --output_file /path/to/output_file --local --clean
+      rgi main --input_sequence /path/to/nucleotide_input.fasta --output_file /path/to/output_file 
+        --local --clean
 
 For AMR gene discovery, this can be expanded to include all Loose matches:
 
@@ -190,7 +191,9 @@ This same analysis can be threaded over many processors if high-performance comp
 
    .. code-block:: sh
 
-      rgi main --input_sequence /path/to/nucleotide_input.fasta --output_file /path/to/output_file --local --clean -a DIAMOND --low_quality --include_nudge --num_threads 40 --split_prodigal_jobs
+      rgi main --input_sequence /path/to/nucleotide_input.fasta
+        --output_file /path/to/output_file --local --clean -a DIAMOND --low_quality
+        --include_nudge --num_threads 40 --split_prodigal_jobs
 
 Running RGI main with Protein Sequences
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