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Update pairedCnvCalling docs
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rhpvorderman committed May 1, 2023
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28 changes: 14 additions & 14 deletions docs/pairedCnvCalling-inputs.md
Original file line number Diff line number Diff line change
Expand Up @@ -103,7 +103,7 @@ PairedCnvCalling.
</dd>
<dt id="PairedCnvCalling.caseSample.callCopyRatioSegments.memory"><a href="#PairedCnvCalling.caseSample.callCopyRatioSegments.memory">PairedCnvCalling.caseSample.callCopyRatioSegments.memory</a></dt>
<dd>
<i>String </i><i>&mdash; Default:</i> <code>"3G"</code><br />
<i>String </i><i>&mdash; Default:</i> <code>"3GiB"</code><br />
The amount of memory this job will use.
</dd>
<dt id="PairedCnvCalling.caseSample.callCopyRatioSegments.timeMinutes"><a href="#PairedCnvCalling.caseSample.callCopyRatioSegments.timeMinutes">PairedCnvCalling.caseSample.callCopyRatioSegments.timeMinutes</a></dt>
Expand All @@ -118,7 +118,7 @@ PairedCnvCalling.
</dd>
<dt id="PairedCnvCalling.caseSample.collectAllelicCounts.memory"><a href="#PairedCnvCalling.caseSample.collectAllelicCounts.memory">PairedCnvCalling.caseSample.collectAllelicCounts.memory</a></dt>
<dd>
<i>String </i><i>&mdash; Default:</i> <code>"11G"</code><br />
<i>String </i><i>&mdash; Default:</i> <code>"11GiB"</code><br />
The amount of memory this job will use.
</dd>
<dt id="PairedCnvCalling.caseSample.collectAllelicCounts.timeMinutes"><a href="#PairedCnvCalling.caseSample.collectAllelicCounts.timeMinutes">PairedCnvCalling.caseSample.collectAllelicCounts.timeMinutes</a></dt>
Expand All @@ -138,7 +138,7 @@ PairedCnvCalling.
</dd>
<dt id="PairedCnvCalling.caseSample.collectReadCounts.memory"><a href="#PairedCnvCalling.caseSample.collectReadCounts.memory">PairedCnvCalling.caseSample.collectReadCounts.memory</a></dt>
<dd>
<i>String </i><i>&mdash; Default:</i> <code>"8G"</code><br />
<i>String </i><i>&mdash; Default:</i> <code>"8GiB"</code><br />
The amount of memory this job will use.
</dd>
<dt id="PairedCnvCalling.caseSample.collectReadCounts.timeMinutes"><a href="#PairedCnvCalling.caseSample.collectReadCounts.timeMinutes">PairedCnvCalling.caseSample.collectReadCounts.timeMinutes</a></dt>
Expand All @@ -153,7 +153,7 @@ PairedCnvCalling.
</dd>
<dt id="PairedCnvCalling.caseSample.denoiseReadCounts.memory"><a href="#PairedCnvCalling.caseSample.denoiseReadCounts.memory">PairedCnvCalling.caseSample.denoiseReadCounts.memory</a></dt>
<dd>
<i>String </i><i>&mdash; Default:</i> <code>"5G"</code><br />
<i>String </i><i>&mdash; Default:</i> <code>"5GiB"</code><br />
The amount of memory this job will use.
</dd>
<dt id="PairedCnvCalling.caseSample.denoiseReadCounts.timeMinutes"><a href="#PairedCnvCalling.caseSample.denoiseReadCounts.timeMinutes">PairedCnvCalling.caseSample.denoiseReadCounts.timeMinutes</a></dt>
Expand All @@ -173,7 +173,7 @@ PairedCnvCalling.
</dd>
<dt id="PairedCnvCalling.caseSample.modelSegments.memory"><a href="#PairedCnvCalling.caseSample.modelSegments.memory">PairedCnvCalling.caseSample.modelSegments.memory</a></dt>
<dd>
<i>String </i><i>&mdash; Default:</i> <code>"11G"</code><br />
<i>String </i><i>&mdash; Default:</i> <code>"11GiB"</code><br />
The amount of memory this job will use.
</dd>
<dt id="PairedCnvCalling.caseSample.modelSegments.minimumTotalAlleleCountCase"><a href="#PairedCnvCalling.caseSample.modelSegments.minimumTotalAlleleCountCase">PairedCnvCalling.caseSample.modelSegments.minimumTotalAlleleCountCase</a></dt>
Expand All @@ -193,7 +193,7 @@ PairedCnvCalling.
</dd>
<dt id="PairedCnvCalling.caseSample.plotDenoisedCopyRatios.memory"><a href="#PairedCnvCalling.caseSample.plotDenoisedCopyRatios.memory">PairedCnvCalling.caseSample.plotDenoisedCopyRatios.memory</a></dt>
<dd>
<i>String </i><i>&mdash; Default:</i> <code>"4G"</code><br />
<i>String </i><i>&mdash; Default:</i> <code>"4GiB"</code><br />
The amount of memory this job will use.
</dd>
<dt id="PairedCnvCalling.caseSample.plotDenoisedCopyRatios.timeMinutes"><a href="#PairedCnvCalling.caseSample.plotDenoisedCopyRatios.timeMinutes">PairedCnvCalling.caseSample.plotDenoisedCopyRatios.timeMinutes</a></dt>
Expand All @@ -208,7 +208,7 @@ PairedCnvCalling.
</dd>
<dt id="PairedCnvCalling.caseSample.plotModeledSegments.memory"><a href="#PairedCnvCalling.caseSample.plotModeledSegments.memory">PairedCnvCalling.caseSample.plotModeledSegments.memory</a></dt>
<dd>
<i>String </i><i>&mdash; Default:</i> <code>"4G"</code><br />
<i>String </i><i>&mdash; Default:</i> <code>"4GiB"</code><br />
The amount of memory this job will use.
</dd>
<dt id="PairedCnvCalling.caseSample.plotModeledSegments.timeMinutes"><a href="#PairedCnvCalling.caseSample.plotModeledSegments.timeMinutes">PairedCnvCalling.caseSample.plotModeledSegments.timeMinutes</a></dt>
Expand All @@ -223,7 +223,7 @@ PairedCnvCalling.
</dd>
<dt id="PairedCnvCalling.controlSample.callCopyRatioSegments.memory"><a href="#PairedCnvCalling.controlSample.callCopyRatioSegments.memory">PairedCnvCalling.controlSample.callCopyRatioSegments.memory</a></dt>
<dd>
<i>String </i><i>&mdash; Default:</i> <code>"3G"</code><br />
<i>String </i><i>&mdash; Default:</i> <code>"3GiB"</code><br />
The amount of memory this job will use.
</dd>
<dt id="PairedCnvCalling.controlSample.callCopyRatioSegments.timeMinutes"><a href="#PairedCnvCalling.controlSample.callCopyRatioSegments.timeMinutes">PairedCnvCalling.controlSample.callCopyRatioSegments.timeMinutes</a></dt>
Expand All @@ -238,7 +238,7 @@ PairedCnvCalling.
</dd>
<dt id="PairedCnvCalling.controlSample.collectAllelicCounts.memory"><a href="#PairedCnvCalling.controlSample.collectAllelicCounts.memory">PairedCnvCalling.controlSample.collectAllelicCounts.memory</a></dt>
<dd>
<i>String </i><i>&mdash; Default:</i> <code>"11G"</code><br />
<i>String </i><i>&mdash; Default:</i> <code>"11GiB"</code><br />
The amount of memory this job will use.
</dd>
<dt id="PairedCnvCalling.controlSample.collectAllelicCounts.timeMinutes"><a href="#PairedCnvCalling.controlSample.collectAllelicCounts.timeMinutes">PairedCnvCalling.controlSample.collectAllelicCounts.timeMinutes</a></dt>
Expand All @@ -258,7 +258,7 @@ PairedCnvCalling.
</dd>
<dt id="PairedCnvCalling.controlSample.collectReadCounts.memory"><a href="#PairedCnvCalling.controlSample.collectReadCounts.memory">PairedCnvCalling.controlSample.collectReadCounts.memory</a></dt>
<dd>
<i>String </i><i>&mdash; Default:</i> <code>"8G"</code><br />
<i>String </i><i>&mdash; Default:</i> <code>"8GiB"</code><br />
The amount of memory this job will use.
</dd>
<dt id="PairedCnvCalling.controlSample.collectReadCounts.timeMinutes"><a href="#PairedCnvCalling.controlSample.collectReadCounts.timeMinutes">PairedCnvCalling.controlSample.collectReadCounts.timeMinutes</a></dt>
Expand All @@ -273,7 +273,7 @@ PairedCnvCalling.
</dd>
<dt id="PairedCnvCalling.controlSample.denoiseReadCounts.memory"><a href="#PairedCnvCalling.controlSample.denoiseReadCounts.memory">PairedCnvCalling.controlSample.denoiseReadCounts.memory</a></dt>
<dd>
<i>String </i><i>&mdash; Default:</i> <code>"5G"</code><br />
<i>String </i><i>&mdash; Default:</i> <code>"5GiB"</code><br />
The amount of memory this job will use.
</dd>
<dt id="PairedCnvCalling.controlSample.denoiseReadCounts.timeMinutes"><a href="#PairedCnvCalling.controlSample.denoiseReadCounts.timeMinutes">PairedCnvCalling.controlSample.denoiseReadCounts.timeMinutes</a></dt>
Expand All @@ -293,7 +293,7 @@ PairedCnvCalling.
</dd>
<dt id="PairedCnvCalling.controlSample.modelSegments.memory"><a href="#PairedCnvCalling.controlSample.modelSegments.memory">PairedCnvCalling.controlSample.modelSegments.memory</a></dt>
<dd>
<i>String </i><i>&mdash; Default:</i> <code>"11G"</code><br />
<i>String </i><i>&mdash; Default:</i> <code>"11GiB"</code><br />
The amount of memory this job will use.
</dd>
<dt id="PairedCnvCalling.controlSample.modelSegments.minimumTotalAlleleCountCase"><a href="#PairedCnvCalling.controlSample.modelSegments.minimumTotalAlleleCountCase">PairedCnvCalling.controlSample.modelSegments.minimumTotalAlleleCountCase</a></dt>
Expand All @@ -313,7 +313,7 @@ PairedCnvCalling.
</dd>
<dt id="PairedCnvCalling.controlSample.plotDenoisedCopyRatios.memory"><a href="#PairedCnvCalling.controlSample.plotDenoisedCopyRatios.memory">PairedCnvCalling.controlSample.plotDenoisedCopyRatios.memory</a></dt>
<dd>
<i>String </i><i>&mdash; Default:</i> <code>"4G"</code><br />
<i>String </i><i>&mdash; Default:</i> <code>"4GiB"</code><br />
The amount of memory this job will use.
</dd>
<dt id="PairedCnvCalling.controlSample.plotDenoisedCopyRatios.timeMinutes"><a href="#PairedCnvCalling.controlSample.plotDenoisedCopyRatios.timeMinutes">PairedCnvCalling.controlSample.plotDenoisedCopyRatios.timeMinutes</a></dt>
Expand All @@ -328,7 +328,7 @@ PairedCnvCalling.
</dd>
<dt id="PairedCnvCalling.controlSample.plotModeledSegments.memory"><a href="#PairedCnvCalling.controlSample.plotModeledSegments.memory">PairedCnvCalling.controlSample.plotModeledSegments.memory</a></dt>
<dd>
<i>String </i><i>&mdash; Default:</i> <code>"4G"</code><br />
<i>String </i><i>&mdash; Default:</i> <code>"4GiB"</code><br />
The amount of memory this job will use.
</dd>
<dt id="PairedCnvCalling.controlSample.plotModeledSegments.timeMinutes"><a href="#PairedCnvCalling.controlSample.plotModeledSegments.timeMinutes">PairedCnvCalling.controlSample.plotModeledSegments.timeMinutes</a></dt>
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