Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
@ErinWeisbart These are all copied over from the NeuroPainting project
Progenitors:
https://github.com/broadinstitute/NeuroPainting/tree/master/1.run-workflows/pipeline/NCP_PROGENITORS_1
Neurons:
https://github.com/broadinstitute/NeuroPainting/tree/master/1.run-workflows/pipeline/2022_03_03_NCP_NEURONS_2_20x
https://github.com/broadinstitute/NeuroPainting/tree/master/1.run-workflows/pipeline/2022_03_03_NCP_NEURONS_2_63x
Stem cells:
https://github.com/broadinstitute/imaging-platform-pipelines/tree/master/cellpainting_ipsc_20x_phenix_with_bf_bin1_cp3
Astrocytes:
https://imaging-platform.s3.amazonaws.com/projects/2019_05_28_Neuronal_Cell_Painting/workspace/pipelines/2022-08-07_batch