Update docker-compose-setup.sh to use GAR (SCP-5153)

[bistline]

BACKGROUND & CHANGES

Similar to broadinstitute/single_cell_portal_core#2187, this updates any gcloud commands that used Container Registry to now use Artifact Registry. This is part of the mandatory switchover that must be completed by the end of March 2025.

MANUAL TESTING

1. Ensure Docker is running
2. Go to the project directory and run the docker-compose-setup.sh script, confirming you are left inside the running Docker container:

$ scripts/docker-compose-setup.sh 
...
Listing items under project broad-singlecellportal-staging, location us, repository gcr.io.

### SETTING UP ENVIRONMENT ###
704fa3f: Pulling from broad-singlecellportal-staging/scp-ingest-pipeline-development
Digest: sha256:004e30bb0c98e31f17e707ac2a391f8ce320823d3bbde568db534c739013d32f
Status: Image is up to date for gcr.io/broad-singlecellportal-staging/scp-ingest-pipeline-development:704fa3f
gcr.io/broad-singlecellportal-staging/scp-ingest-pipeline-development:704fa3f
...

root@068c1a08ccae:/scp-ingest-pipeline/ingest# 

Note: if you receive a scripts/docker-compose-setup.sh: line 60: docker-compose: command not found error, run the remediation steps listed at https://docs.docker.com/compose/install/ regarding the issue with docker-compose in versions after 4.23.

[bistline]

Build failure for minify ontologies fixed in #377

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 75.79%. Comparing base (704fa3f) to head (dccb571).
Report is 2 commits behind head on development.

Additional details and impacted files

@@             Coverage Diff              @@
##           development     #378   +/-   ##
============================================
  Coverage        75.79%   75.79%           
============================================
  Files               30       30           
  Lines             4470     4470           
============================================
  Hits              3388     3388           
  Misses            1082     1082           

[jlchang]

Thanks for the pointer to the docker-compose fix. Once I updated that symlink, everything worked as described :)