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v2.0.1 - species agnostic, CRAM, parallel alleleCount

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@keiranmraine keiranmraine released this 31 Mar 14:55
· 247 commits to dev since this release
v2.0.1
b667084
  • Now species agnostic provided you can generate a panel of SNPs, approx 1 HET per 2kb is required. Tools are included in the package for guided and unguided SNP generation. More details can be found in the wiki.
  • Supports CRAM
  • Allele count phase is now threaded.

NOTE: Individual scripts called by ascat.pl have been renamed to prevent potential namespace clashes.

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