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✨ Add Mixing Simulation for Hybrid Platform #25

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merged 14 commits into from
Aug 2, 2024
Merged

✨ Add Mixing Simulation for Hybrid Platform #25

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b317dd7
:sparkles: Tissue and OoC Simulator definitions
micheltakken Jul 18, 2024
6d3a0b6
:sparkles: Tissue and OoC Simulator definitions
micheltakken Jul 19, 2024
fe44495
:construction: Debug advection diffusion solver
micheltakken Jul 19, 2024
a2cf8fd
:bug: Fix segfault advection diffusion solver
micheltakken Jul 23, 2024
f39a6a7
:bug: Fix NS and AD coupling
micheltakken Jul 23, 2024
ca98b3c
:art: Partition function definitions for olbSimulators
micheltakken Jul 23, 2024
c863d98
:racehorse::art: Partition function definitions for cfdSimulators
micheltakken Jul 24, 2024
0a04aaa
:bug: Remove hardcoded concentration value
micheltakken Jul 24, 2024
7a225b7
:construction: Add Abstract and CFD coupling for mixtures
micheltakken Jul 24, 2024
f1483e4
Fixed stlFile endless loop
micheltakken Jul 10, 2024
279b295
:construction: Add Abstract and CFD coupling for mixtures
micheltakken Jul 25, 2024
407ff18
:construction: Add Abstract and CFD coupling for mixtures
micheltakken Jul 27, 2024
951a749
:sparkles: Add Abstract and CFD coupling for mixtures
micheltakken Aug 2, 2024
9153d95
:heavy_check_mark: Pass tests :lipstick: Adress comments :bug: Resolv…
micheltakken Aug 2, 2024
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243 changes: 243 additions & 0 deletions examples/Hybrid/Mixing1a.JSON
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Original file line number Diff line number Diff line change
@@ -0,0 +1,243 @@
{
"network": {
"nodes": [
{
"x": 0.0,
"y": 0.0,
"z": 0.0,
"ground": true
},
{
"x": 1e-3,
"y": 2e-3,
"z": 0.0
},
{
"x": 1e-3,
"y": 1e-3,
"z": 0.0
},
{
"x": 1e-3,
"y": 0.0,
"z": 0.0
},
{
"x": 2e-3,
"y": 2e-3,
"z": 0.0
},
{
"x": 1.75e-3,
"y": 1e-3,
"z": 0.0
},
{
"x": 2e-3,
"y": 0.0,
"z": 0.0
},
{
"x": 2e-3,
"y": 1.25e-3,
"z": 0.0
},
{
"x": 2e-3,
"y": 0.75e-3,
"z": 0.0
},
{
"x": 2.25e-3,
"y": 1e-3,
"z": 0.0
},
{
"x": 3e-3,
"y": 1e-3,
"z": 0.0,
"ground": true
}
],
"channels": [
{
"node1": 0,
"node2": 1,
"width": 1e-4,
"height": 1e-4
},
{
"node1": 0,
"node2": 2,
"width": 1e-4,
"height": 1e-4
},
{
"node1": 0,
"node2": 3,
"width": 1e-4,
"height": 1e-4
},
{
"node1": 1,
"node2": 4,
"width": 1e-4,
"height": 1e-4
},
{
"node1": 2,
"node2": 5,
"width": 1e-4,
"height": 1e-4
},
{
"node1": 3,
"node2": 6,
"width": 1e-4,
"height": 1e-4
},
{
"node1": 4,
"node2": 7,
"width": 1e-4,
"height": 1e-4
},
{
"node1": 6,
"node2": 8,
"width": 1e-4,
"height": 1e-4
},
{
"node1": 9,
"node2": 10,
"width": 1e-4,
"height": 1e-4
}
],
"modules": [
{
"position": [1.75e-3, 0.75e-3],
"size": [5e-4, 5e-4],
"nodes": [5, 7, 8, 9]
}
]
},
"simulation": {
"platform": "Mixing",
"type": "Hybrid",
"resistanceModel": "Poiseuille",
"mixingModel": "Instantaneous",
"fluids": [
{
"name": "Water",
"concentration": 1,
"density": 1000,
"viscosity": 0.001
}
],
"species": [
{
"name": "O2",
"diffusivity": 1e-8,
"saturationConcentration": 1.0,
"molecularSize": 0.0
}
],
"mixtures": [
{
"species": [0],
"concentrations": [1.1]
}
],
"pumps": [
{
"channel":0,
"type": "PumpPressure",
"deltaP": 1000
},
{
"channel":1,
"type": "PumpPressure",
"deltaP": 1000
},
{
"channel":2,
"type": "PumpPressure",
"deltaP": 1000
}
],
"fixtures": [
{
"name": "Setup #1",
"phase": 0,
"mixtureInjections": [
{
"mixture": 0,
"channel": 4,
"t0": 0.0
}
]
}
],
"activeFixture": 0,
"settings": {
"simulators": [
{
"Type": "Mixing",
"name": "Mixing1a",
"stlFile": "../examples/STL/cross.stl",
"charPhysLength": 1e-4,
"charPhysVelocity": 1e-1,
"alpha": 0.1,
"resolution": 20,
"epsilon": 1e-1,
"tau": 0.55,
"moduleId": 0,
"Openings": [
{
"node": 5,
"normal": {
"x": 1.0,
"y": 0.0,
"z": 0.0
},
"width": 1e-4,
"height": 1e-4
},
{
"node": 7,
"normal": {
"x": 0.0,
"y": -1.0,
"z": 0.0
},
"width": 1e-4,
"height": 1e-4
},
{
"node": 8,
"normal": {
"x": 0.0,
"y": 1.0,
"z": 0.0
},
"width": 1e-4,
"height": 1e-4
},
{
"node": 9,
"normal": {
"x": -1.0,
"y": 0.0,
"z": 0.0
},
"width": 1e-4,
"height": 1e-4
}
]
}
]
}
}
}
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