Add files via upload

buffer_outdated_checker.sh

@@ -0,0 +1,11 @@
+#!/bin/zsh
+library=~`echo -n $bibtex_library_path | sed -e "s/~//"`
+library_2=~`echo -n $second_library | sed -e "s/~//"`
+buffer="$alfred_workflow_data""/buffer.json"
+
+# for whatever reason, [ -e $buffer] does not work, but when buffer is missing, the statement also becomes true, so this works
+if [ "$buffer" -nt "$library" ] && [ "$buffer" -nt "$library_2" ] ; then
+    echo -n "buffer up-to-date"
+else
+    echo -n "buffer outdated or non-existent"
+fi

buffer_writer.js

@@ -0,0 +1,163 @@
+#!/usr/bin/env osascript -l JavaScript
+function run(){
+
+ObjC.import('stdlib');
+const alfred_bar_length = parseInt ($.getenv('alfred_bar_length'));
+const urlIcon = $.getenv('IconURL');
+const doiIcon = $.getenv('IconDOI');
+
+// resolve ~
+app = Application.currentApplication();
+app.includeStandardAdditions = true;
+const homepath = app.pathTo('home folder');
+const library = $.getenv('bibtex_library_path').replace(/^~/, homepath);
+const library_2 = $.getenv('second_library').replace(/^~/, homepath);
+
+//read bib file &  remove unecessary info to increase speed
+var input = app.doShellScript('cat "' + library + '" | grep -vwE "(abstract|annotate|Bdsk-Url-1|Bdsk-Url-2|date-modified|date-added|keywords|issn|langid|urlyear|isbn|location|pagetotal|series|eprint) =" | grep -vw "%%"');
+if (library_2 != ""){
+    input = input + "\r" + app.doShellScript('cat "' + library_2 + '" | grep -vwE "(abstract|annotate|Bdsk-Url-1|Bdsk-Url-2|date-modified|date-added|keywords|issn|langid|urlyear|isbn|location|pagetotal|series|eprint) =" | grep -vw "%%"');
+}
+
+
+// BibTeX-Decoding
+const german_chars = ['{\\"u};ü','{\\"a};ä','{\\"o};ö','{\\"U};Ü','{\\"A};Ä','{\\"O};Ö','\\"u;ü','\\"a;ä','\\"o;ö','\\"U;Ü','\\"A;Ä','\\"O;Ö','\\ss;ß','{\\ss};ß'];
+const other_chars = ["{\\~n};ñ","{\\'a};á","{\\'e};é","{\\v c};č","\\c{c};ç","\\o{};ø","\\^{\i};î",'\\"{\i};î','\\"{\i};ï',"{\\'c};ć",'\\"e;ë',];
+const special_chars = ["{\\~n};ñ","\\&;&",'``;"',"`;'","\\textendash{};—","---;—","--;—"];
+const decode_pair = [...german_chars, ...other_chars, ...special_chars];
+decode_pair.forEach(pair => {
+    let half = pair.split(";");
+    input = input.replaceAll (half[0],half[1]);
+});
+
+const input_array = input.split("@");
+var entry_array = [];
+
+
+function extract (str){
+    str = str.split(" = ")[1];
+    return str.replace (/,$/,"");
+}
+
+input_array.forEach(entry => {
+    let properties = entry.split ("\r");
+    let citekey = "";
+    let author = "";
+    let title = "";
+    let year = "";
+    let authormatches = "";
+    let type = "";
+    let editor = "";
+    let url = "";
+    let collection = "";
+    let doi = "";
+    let volume = "";
+    let issue = "";
+    let numberOfEditors = 0;
+
+    citekey = properties[0].replace (/.*{(.*),/,"$1");
+    type = properties[0].replace (/(.*){.*/,"$1");
+
+    properties.forEach (property => {
+        property = property.replace (/[\{|\}]/g,"");
+        if (property.includes ("author =")){
+      		author = extract (property);
+    		author = author.replace (/(, [A-Z]).+?(?= and|$)/gm,""); //remove first names
+    		author = author.replaceAll (" and "," & ");
+    		authormatches = author;
+    		author = author.replace (/\&.*\&.*/,"et al."); // insert et al
+      	} else if (property.includes ("editor =")){
+      		editor = extract (property);
+    		editor = editor.replace (/(, [A-Z]).+?(?= and|$)/gm,""); //remove first names
+    		editor = editor.replaceAll (" and "," & ");
+    		authormatches = editor + " " + authormatches;
+    		numberOfEditors = editor.split("&").length;
+    		editor = editor.replace (/\&.*\&.*/,"et al."); // insert et al
+      	} else if (property.match(/\stitle \=/i) != null){
+      		title = extract (property);
+    		//shorten, if title too long
+    		if (title.length > alfred_bar_length){
+    			title = title.substring(0, alfred_bar_length);
+    			title = title + "...";
+    		}
+      	} else if (property.includes ("year =")){
+      		year = property.replace (/.*=\s*{?(\d{4}).*/,"$1");
+      	} else if  (property.includes ("doi =")){
+      		doi = extract (property);
+      	} else if  (property.includes ("url =")){
+      		url = extract (property);
+      	} else if  (property.includes ("volume =")){
+      		volume = extract (property);
+      	} else if  (property.includes ("number =")){
+      		issue = "(" + extract (property) + ")";
+      	} else if  (property.match(/\s(journal|booktitle)\s*\=/i) != null){
+    		collection = "    In: " + extract (property);
+      	}
+    });
+
+    //if the initial reading of the filecut away the closing bracket, add it
+    let bibtex_entry = "@" + entry;
+    let opening_brackets = (bibtex_entry.match(/\{/g) || []).length;
+    let closing_brackets = (bibtex_entry.match(/\}/g) || []).length;
+    if (opening_brackets > closing_brackets) { bibtex_entry = bibtex_entry + "}" };
+
+    //when no URL, try to use DOI
+    let urlAppendix = "";
+    let URLsubtitle = "⛔️ There is no URL or DOI.";
+    if (url != "") {
+    	URLsubtitle = "⌃: Open URL " + urlIcon;
+    	urlAppendix = "    " + urlIcon;
+    	if (doi != ""){ urlAppendix = urlAppendix + doiIcon };
+    } else if (doi != "") {
+        URLsubtitle = "⌃: Open DOI " + doiIcon;
+        urlAppendix = "    " + doiIcon;
+    }
+
+    //icon selection
+    let type_icon = "";
+    if (type == "article") {
+        type_icon = "article.png";
+        collection = collection + " " + volume + issue;
+    }
+    else if (type == "book") { type_icon = "book.png"}
+    else if (type == "inbook") { type_icon = "book_chapter.png"}
+    else if (type == "incollection") { type_icon = "book_chapter.png"}
+    else if (type == "misc") { type_icon = "manuscript.png"}
+    else if (type == "unpublished") { type_icon = "manuscript.png"}
+    else if (type == "techreport") { type_icon = "technical_report.png"}
+    else if (type == "inproceedings") { type_icon = "conference.png"}
+
+    // determines correct editor-abbreviation
+    if (numberOfEditors > 1) {var editorAbbrev = "(Eds.)"}
+    else {var editorAbbrev = "(Ed.)"}
+
+    // displays editor when there are no authors
+    var authoreditor = author + " ";
+    if ((author == "") && (editor != "")) {
+    	authoreditor = editor + " " + editorAbbrev  + " ";
+    } else if ((author == "") && (editor == "")) {
+    	authoreditor = "";
+    }
+
+    entry_array.push ({
+        'title': title,
+        'autocomplete': authoreditor,
+        'subtitle': authoreditor + year + collection + urlAppendix,
+    	'match': title + " " + authormatches + " " + year + " " + collection,
+        'arg': "@" + citekey,
+    	'icon': {'path': type_icon },
+    	'uid': citekey,
+    	"text": { "copy": url },
+    	"mods": {
+    	    "ctrl": {
+    	        "valid": (url != ""),
+    	        "arg": url,
+    	        "subtitle": URLsubtitle,
+    	    },
+    	    "fn": {"arg": bibtex_entry }
+    	}
+    })
+});
+
+return JSON.stringify({ 'items': entry_array });
+}

citation_picker.js

@@ -0,0 +1,9 @@
+#!/usr/bin/env osascript -l JavaScript
+function run(){
+
+ObjC.import('stdlib');
+app = Application.currentApplication();
+app.includeStandardAdditions = true;
+
+return app.doShellScript('cat "' + $.getenv('alfred_workflow_data') + '/buffer.json" ');
+}

generate_bib.sh

@@ -0,0 +1,13 @@
+#!/bin/zsh
+export PATH=/usr/local/bin:$PATH
+
+bibtexentry="$*"
+citekey="@"`echo -n $bibtexentry | cut -d "," -f 1 | cut -d "{" -f 2`
+tempbib="$alfred_workflow_cache""/temp_entry.bib"
+mkdir -p "$alfred_workflow_cache"
+echo -n $bibtexentry > $tempbib
+
+csl=~`echo -n $csl_file | sed -e "s/^~//"`
+dummyDoc="---\nnocite: |\n  "$citekey"\n---\n::: {#refs}\n:::"
+
+echo -n $dummyDoc | pandoc --citeproc --read=markdown --write=plain --csl $csl --bibliography $tempbib | tr "\n" " "