change colour of NA cells & left-align legend title

coenzymeQbiology · Feb 3, 2021 · 6a620ec · 6a620ec
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diff --git a/docs/CNS_files/figure-html/unnamed-chunk-1-1.png b/docs/CNS_files/figure-html/unnamed-chunk-1-1.png
diff --git a/docs/Heart_files/figure-html/unnamed-chunk-1-1.png b/docs/Heart_files/figure-html/unnamed-chunk-1-1.png
diff --git a/docs/Kidney_files/figure-html/unnamed-chunk-1-1.png b/docs/Kidney_files/figure-html/unnamed-chunk-1-1.png
diff --git a/docs/Liver_files/figure-html/unnamed-chunk-1-1.png b/docs/Liver_files/figure-html/unnamed-chunk-1-1.png
diff --git a/docs/Lung_files/figure-html/unnamed-chunk-1-1.png b/docs/Lung_files/figure-html/unnamed-chunk-1-1.png
diff --git a/docs/Muscle_files/figure-html/unnamed-chunk-1-1.png b/docs/Muscle_files/figure-html/unnamed-chunk-1-1.png
diff --git a/docs/Other_files/figure-html/unnamed-chunk-1-1.png b/docs/Other_files/figure-html/unnamed-chunk-1-1.png
diff --git a/docs/PNS-Sensory_files/figure-html/unnamed-chunk-1-1.png b/docs/PNS-Sensory_files/figure-html/unnamed-chunk-1-1.png
diff --git a/docs/Table.html b/docs/Table.html
diff --git a/docs/index.html b/docs/index.html
@@ -362,7 +362,7 @@ <h1 class="title toc-ignore">Clinical manifestations of primary CoQ deficiencies
 <p>In the tabs above you can search the frequency of clinical manifestations grouped by system for each gene.</p>
 <p>Go to <a href="Table.html">table</a> to search the data by involved system, specific manifestation or <em>COQ</em> gene.</p>
 <p>This tool is part of the review <em>GENOTYPE-PHENOTYPE CORRELATIONS IN PRIMARY COENZYME Q DEFICIENCIES</em>, María Alcázar-Fabra, Francisco Rodríguez-Sánchez, Eva Trevisson &amp; Gloria Brea-Calvo (submitted).</p>
-<p>Last update: 2021-02-01</p>
+<p>Last update: 2021-02-03</p>
 
 
 

diff --git a/utils.R b/utils.R
@@ -61,13 +61,13 @@ plotfun <- function(df = datos.long, grupo = NULL, npat = npatients) {
     #scale_fill_viridis(name = "% patients", option = "magma") +
     scale_fill_distiller(name = "% patients\nshowing\nspecific\nsymptom\n(per gene)\n", type = "seq",
                          palette = "YlGnBu", direction = 1,
-                         limits = c(0.001, 100), na.value = "grey99") +
+                         limits = c(0.001, 100), na.value = "#FFFFE04D") +
     coord_equal(clip = "off") +
     scale_x_discrete(position = "top") +
     theme(axis.text.x.top = element_text(angle = 90, hjust = 0, vjust = 0.5)) +
     xlab("") +
     ylab("") +
-    theme(legend.title.align = 0.5, legend.title = element_text(size = 10)) +
+    theme(legend.title.align = 0, legend.title = element_text(size = 10)) +
     theme(plot.margin = unit(c(0, 0, 0.5, 0), "cm")) +
     theme(panel.background = element_blank()) +
     geom_text(data = patients, aes(y = 0, label = n.pat), size = 3) +