remove extra space

common-workflow-lab · Apr 15, 2024 · f0ecb93 · f0ecb93
1 parent b29244e
commit f0ecb93
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Showing 4 changed files with 8 additions and 3 deletions.
diff --git a/wdl2cwl/tests/cwl_files/BuildIndices.cwl b/wdl2cwl/tests/cwl_files/BuildIndices.cwl
@@ -414,7 +414,7 @@ steps:
             networkAccess: true
         hints:
           - class: DockerRequirement
-            dockerPull: 'quay.io/humancellatlas/snss2-indices:1.1.0 '
+            dockerPull: quay.io/humancellatlas/snss2-indices:1.1.0
           - class: ResourceRequirement
             coresMin: 16
             ramMin: 51200.0

diff --git a/wdl2cwl/tests/cwl_tests_bigdata.yaml b/wdl2cwl/tests/cwl_tests_bigdata.yaml
@@ -53,7 +53,7 @@
 
 # snaptools embeds paths and timestamps, and so it is not reproducible
 # - doc: ATAC
-#   tool: cwl_file/ATAC.cwl
+#   tool: cwl_files/ATAC.cwl
 #   job: inputs/ATAC.yaml
 #   output:
 #     ATAC.snap_output:

diff --git a/wdl2cwl/tests/inputs/BuildIndices_mouse.yaml b/wdl2cwl/tests/inputs/BuildIndices_mouse.yaml
@@ -0,0 +1,5 @@
+gtf_version: "M21"
+organism: "mouse"
+organism_prefix: "m"
+genome_short_string: "mm10"
+dbsnp_version: "150"
diff --git a/wdl2cwl/tests/wdl_files/BuildIndices.wdl b/wdl2cwl/tests/wdl_files/BuildIndices.wdl
@@ -132,7 +132,7 @@ task BuildStarSingleNucleus {
   }
 
   runtime {
-    docker: "quay.io/humancellatlas/snss2-indices:1.1.0 "
+    docker: "quay.io/humancellatlas/snss2-indices:1.1.0"
     memory: "50 GiB"
     disks :"local-disk 100 HDD"
     cpu:"16"