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@deepomicslab

DeepOmics Lab

Focus on Bioinformatics Toolkits Development
README.md

Hi there 👋

Welcome to DeepomicsLab!

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  1. SpecHLA SpecHLA Public

    SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read…

    C++ 40 9

  2. GCNFrame GCNFrame Public

    This is a python package for genomics study with a GCN framework.

    Python 39 7

  3. DeepHost DeepHost Public

    This is the repository for DeepHost, a phage host prediction tool.

    Python 19

  4. LocalHGT LocalHGT Public

    Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

    Python 13 1

  5. SpecHap SpecHap Public

    C++ 12 3

  6. SeCNV SeCNV Public

    This is the repository for SeCNV, a single cell copy number profiling tool.

    Python 10 2

Repositories

Showing 10 of 60 repositories
  • Interaction-redundancy Public

    Deciphering microbial interactions with functional redundancy in human microbial community with partial information decomposition.

    deepomicslab/Interaction-redundancy’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Jan 10, 2025
  • Genome-wide-coverage-profiling Public
    deepomicslab/Genome-wide-coverage-profiling’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 9, 2025
  • mrnadesign_web Public
    deepomicslab/mrnadesign_web’s past year of commit activity
    Vue 0 0 0 0 Updated Jan 8, 2025
  • mrnadesign_api Public
    deepomicslab/mrnadesign_api’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 8, 2025
  • CASCAT Public
    deepomicslab/CASCAT’s past year of commit activity
    Python 1 0 0 0 Updated Jan 7, 2025
  • SCOIT Public

    SCOIT is an implementation of a probabilistic tensor decomposition framework for single-cell multi-omics data integration.

    deepomicslab/SCOIT’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Dec 12, 2024
  • DeepHost Public

    This is the repository for DeepHost, a phage host prediction tool.

    deepomicslab/DeepHost’s past year of commit activity
    Python 19 0 0 0 Updated Dec 12, 2024
  • SeCNV Public

    This is the repository for SeCNV, a single cell copy number profiling tool.

    deepomicslab/SeCNV’s past year of commit activity
    Python 10 2 3 0 Updated Dec 12, 2024
  • Graphage Public

    This is the repository for GraphPhage, a phage analysis tool that integrates phage and ICE discrimination, phage integration site prediction, phage lifestyle prediction, and phage host prediction.

    deepomicslab/Graphage’s past year of commit activity
    Python 8 1 0 0 Updated Dec 12, 2024
  • GCNFrame Public

    This is a python package for genomics study with a GCN framework.

    deepomicslab/GCNFrame’s past year of commit activity
    Python 39 MIT 7 1 0 Updated Dec 12, 2024
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