Use stdlib bz2 instead of bz2file

dib-lab · Aug 22, 2022 · cf39e0b · cf39e0b
1 parent 9dafc78
commit cf39e0b
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/khmer/kfile.py b/khmer/kfile.py
@@ -40,7 +40,7 @@
 import errno
 from stat import S_ISBLK, S_ISFIFO, S_ISCHR
 import gzip
-import bz2file
+import bz2
 
 
 def check_input_files(file_path, force):
@@ -241,7 +241,7 @@ def get_file_writer(file_handle, do_gzip, do_bzip):
     if do_gzip:
         ofile = gzip.GzipFile(fileobj=file_handle, mode='w')
     elif do_bzip:
-        ofile = bz2file.open(file_handle, mode='w')
+        ofile = bz2.open(file_handle, mode='w')
     else:
         ofile = file_handle
 

diff --git a/setup.py b/setup.py
@@ -277,7 +277,7 @@ def build_dir():
         "packages": ['khmer', 'khmer.tests', 'oxli', 'khmer._oxli'],
         "package_data": {'khmer/_oxli': ['*.pxd']},
         "package_dir": {'khmer.tests': 'tests'},
-        "install_requires": ['screed>=1.0', 'bz2file'],
+        "install_requires": ['screed>=1.0'],
         "setup_requires": ['setuptools>=18.0'],
         "extras_require": {':python_version=="2.6"': ['argparse>=1.2.1'],
                            'docs': ['sphinx', 'sphinxcontrib-autoprogram'],