Update deps and minor fixes

[fedejaure]

Fixes #656 #612

Proposed Changes

• Update actions/download-artifact (4.1.7 -> 4.1.8)
• Update actions/upload-artifact (4.3.3 -> 4.4.3)
• Fix upload coverage artifacts
• Update pytest-cov (5.0.0 -> 6.0.0)
• Update coverage (7.5.3 -> 7.6.7)
• Update typer (0.12.3 -> 0.13.0)
• Ignore for one more year the jinja2 issue
• Fix Fix nox coverage sessions #612 nox coverage session under an interactive execution
• Update sub deps
• Fix release pypi removing attestation files
• Fix release workflow permissions
• Fix Fix pre-commit-autoupdate workflow #656 adding continue-on-error true on the pre-commit autoupdate step
• Update peter-evans/create-pull-request (6.0.5 -> 7.0.5)
• Update actions/setup-python (5.1.0 -> 5.3.0)
• Update actions/checkout (4.1.6 -> 4.2.2)
• Update ruff (0.4.8 -> 0.7.4)
• Update black (24.4.2 -> 24.10.0)
• Update pre-commit (3.7.1 -> 4.0.1)
• Update mypy (1.10.0 -> 1.13.0)
• Update watchdog (4.0.1 -> 6.0.0)
• Update safety (3.2.1 -> 3.2.11)
• Update pytest (8.2.2 -> 8.3.3)
• Update xdoctest (1.1.4 -> 1.2.0)
• Update sphinx (7.3.7 -> 7.4.7)
• Set package-mode to false