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Support BigDataViwer .xml file #8

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Support BigDataViwer .xml file #8

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2492938
Add bdv file type for BigDataBrowserPlugIn
hkmoon Mar 24, 2015
e338ea6
Support BigDataViewer .xml file
hkmoon Apr 13, 2016
d3c0e88
Add comments describing who's plugins are affected
hkmoon Apr 13, 2016
711b638
Merge branch 'master-fiji'
hkmoon Apr 22, 2016
957382c
Add .bdv file handler for opening BigDataViewerBrowser
hkmoon Apr 22, 2016
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15 changes: 14 additions & 1 deletion src/main/java/HandleExtraFileTypes.java
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Original file line number Diff line number Diff line change
Expand Up @@ -263,7 +263,7 @@ public void run(final String path) {
return tryPlugIn("io.Open_DAT_EMMENU", path);
}

// Albert Cardona: read TrakEM2 .xml files
// Albert Cardona: read TrakEM2 .xml files or read BigDataViewer .xml file
if (name.endsWith(".xml") || name.endsWith(".xml.gz")) {
byte[] b = buf;
if (name.endsWith("z")) {
Expand All @@ -289,6 +289,8 @@ public void run(final String path) {
}
}
}

// Albert Cardona: TrakEM2 .xml file
if (-1 != new String(b).toLowerCase().indexOf("trakem2")) {
try {
// portable way, resists absence of TrakEM2_.jar in the classpath
Expand All @@ -305,6 +307,12 @@ public void run(final String path) {
}
return null;
}

// Tobias Pietzsch: BigDataViewer .xml file
if ( -1 != new String( b ).toLowerCase().indexOf( "<spimdata version=" ) )
{
return tryPlugIn( "bdv.ij.BigDataViewerPlugIn", path );
}
}

// Stephan Saalfeld: read .df3 files. Documentation at:
Expand Down Expand Up @@ -461,6 +469,11 @@ public void run(final String path) {
return tryPlugIn("org.janelia.it.fiji.plugins.h5j.H5j_Reader", path);
}

// Tobias Pietzsch, HongKee Moon: open .bdv file with BigDataBrowserPlugIn
if ( name.endsWith( ".bdv" ) )
{
return tryPlugIn( "bdv.ij.BigDataBrowserPlugIn", path );
}
// ****************** MODIFY HERE ******************
// do what ever you have to do to recognise your own file type
// and then call appropriate plugin using the above as models
Expand Down