aucmedi_v0.7.0

✨ New Features

• 21323b5 - Ensemble: Implemented Composite (cross-validation based stacking) (commit by @muellerdo)
• 20f61f4 - AutoML: Implemented function block - training (commit by @muellerdo)
• 099e105 - AutoML: Added multilabel support for function block training (commit by @muellerdo)
• 74fcfbd - AutoML: added metadata storing in training block (commit by @muellerdo)
• 5fab10a - AutoML: Implemented function block prediction (commit by @muellerdo)
• 2a2e9e9 - AutoML: Implemented XAI option in code block inference (commit by @muellerdo)
• 5b4c095 - Evaluation: added support for transfer learning in fitting evaluation (commit by @muellerdo)
• 47aff85 - AutoML: added evaluation plot generation in block function training (commit by @muellerdo)
• fad6f2d - AutoML: implemented block function evaluation (commit by @muellerdo)
• f7ccf82 - AutoML: Added CLI parser for Training (commit by @muellerdo)
• c521785 - AutoML: added CLI interface for YAML (commit by @muellerdo)
• 0b52a90 - AutoML: added CLI interface for prediction (commit by @muellerdo)
• 6a54157 - AutoML: added CLI interface for evaluation (commit by @muellerdo)
• 2f90edd - AutoML: added more sanity checks to evaluation function block (commit by @muellerdo)
• 7f66f48 - performance: add display option for charts (commit by @SherlockMones)
• 87ae17a - io_interfaces: add file extension to index_list (commit by @SherlockMones)
• 2d563b0 - AutoML: added binary packaging via entry script (commit by @muellerdo)
• 2c5ac70 - data_processing: Improve documentation (commit by @SherlockMones)
• 3566791 - AutoML: reworked AutoML CLI arguments - closes #151 (commit by @muellerdo)
• 96c8d44 - AutoML: dockerized AUCMEDI AutoML - closes #150 (commit by @muellerdo)
• c53819f - evaluation: display fitting progress (commit by @SherlockMones)
• 4711894 - Evaluation: added full transfer learning support for fitting evaluation - closes #157 (commit by @muellerdo)
• cbc2510 - Stacking: added automated standardize and resize parameter estimation for DataGenerator (commit by @muellerdo)

🐛 Bug Fixes

• ea04aad - Ensemble: Added missing library import in Stacking & Bagging (commit by @muellerdo)
• cc53a57 - AutoML: changed incorrect grayscale parameter of DataGenerator in training function block (commit by @muellerdo)
• 8b973d2 - AutoML: some hotfixes for AutoML XAI support (commit by @muellerdo)
• 7c78357 - AutoML: incorrect output path as directory creation (commit by @muellerdo)
• 4a23572 - AutoML: added more config parsing for CLI (3D shape, input and output path) (commit by @muellerdo)
• c31355d - Evaluation: catch no-possible AUROC computation (commit by @muellerdo)
• f4b165c - AutoML: fixed multiple architecture passing for advanced training (commit by @muellerdo)
• 6729798 - Evaluation: fixed unequal length of training epochs by multi model pipelines (commit by @muellerdo)
• c5f9712 - AutoML: forget to exluce yaml parser function in main runner (commit by @muellerdo)
• 05169cf - XAI: added missing inverse of occlusion sensitivity heatmap (commit by @muellerdo)
• 87e3f9d - evaluation: fix evaluate training charts (commit by @SherlockMones)
• e474282 - Evaluation: added support for only transfer learning epochs in evaluate_fitting() (commit by @muellerdo)

⚡ Performance Improvements

• c79110f - Ensemble: Replaced python built-in multiprocessing to pathos multiprocessing (commit by @muellerdo)
• 816fea3 - Ensemble: Re-initialize NeuralNetworks in processes to allow custom loss functions (commit by @muellerdo)
• ab6c0bc - Ensemble: allow dumping of ensemble output into already existing directories (commit by @muellerdo)
• d3988a5 - AutoML: Various improvements of the function block training (commit by @muellerdo)
• e5b8ae2 - AutoML: added sanity checks for multi_label supported metalearners (commit by @muellerdo)
• 2b9b355 - Evaluation: call explicit categorical parsing of class names for omnious class names (numbers) (commit by @muellerdo)
• 834799e - AutoML: switched csvlogger to append mode (commit by @muellerdo)
• 850a6a1 - AutoML: adjusted training hyperparameters of early stopping & dynamicLR (commit by @muellerdo)
• e3fe4ff - AutoML: increased batch size from 12 to 24 (commit by @muellerdo)
• 3db0252 - AutoML: increased sensitivity for help page hook (commit by @muellerdo)
• 2dea1e1 - NeuralNetwork: increased default number of transfer learning epochs to 10 (commit by @muellerdo)

♻️ Refactors

• dfea756 - AutoML: Changed analysis name from composite to advanced (commit by @muellerdo)
• 43ccaa1 - AutoML: Removed data augmentation option from config (commit by @muellerdo)
• cca63ad - AutoML: renamed attribute 'two_dim' to 'three_dim' (commit by @muellerdo)
• b400348 - AutoML: Introduced new AutoML submodule structure (commit by @muellerdo)
• e228403 - AutoML: refactored AutoML script structure (commit by @muellerdo)
• 4a22ed0 - AutoML: added empty script file for yaml parser (commit by @muellerdo)
• 97adf14 - AutoML: separated main method and runner of AutoML main (commit by @muellerdo)

✅ Tests

• c9eae04 - Ensemble: Added unittesting for Composite (commit by @muellerdo)
• d9b7e58 - Ensemble: removed remaining debugging prints (commit by @muellerdo)
• 3657ac5 - AutoML: added unittesting for AutoML function block training (commit by @muellerdo)
• 173d235 - AutoML: Updated some class names and docs (commit by @muellerdo)
• 6f00ca2 - AutoML: Added unittesting for function block prediction (commit by @muellerdo)
• 2024f9a - AutoML: Added tests for XAI (commit by @muellerdo)
• d350858 - AutoML: added unittesting for block function evaluation (commit by @muellerdo)
• 7733e34 - AutoML: added unittesting for CLI (commit by @muellerdo)
• a44bf25 - AutoML: removed no argument testing (commit by @muellerdo)
• 9e75baf - Evaluation: added unittesting for only transfer learning fitting_evaluate() (commit by @muellerdo)
• 0f068aa - AutoML: test CLI only for build Action (commit by @muellerdo)

👷 Build System

• 018aed8 - Added pathos as dependency (commit by @muellerdo)
• 1a76950 - AutoML: fixed a typo in docker release (commit by @muellerdo)
• f0128d4 - Security: updated Pillow & Tensorflow version (commit by @muellerdo)
• 4e5da31 - CodeQuality: changed codecov coverage from requirements to setup build (commit by @muellerdo)
• d0504ac - Updated to version 0.7.0 (commit by @muellerdo)

📝 Documentation Changes

• 6183d72 - Website: Modified relatives pathes of Home page for gh-pages (commit by @muellerdo)
• 5fcf2fe - Website: fixes contribution image on website (commit by @muellerdo)
• 7787ff8 - Reference: added Zenodo link (commit by @muellerdo)
• 5e9041d - PyPI-README: Fixed broken link of logo (commit by @muellerdo)
• 3049080 - Website: fixed incorrect getting started link from README (commit by @muellerdo)
• e9f160e - Website: added site_url to mkdocs.yml - fixes broken 404 pages (commit by @muellerdo)
• b72e728 - Website: Moved workflow figure to separate nav tab (commit by @muellerdo)
• 8c3408e - Evaluate: Fix incorrect example in Comparison (commit by @muellerdo)
• 0fdab3a - Reference: Added ORCID for Simone Mayer (commit by @muellerdo)
• 1edb7fb - AutoML: fixed incorrect comment in training block function (commit by @muellerdo)
• 4ed4995 - AutoML: Added docstrings to train and predict function blocks (commit by @muellerdo)
• 4522abe - AutoML: improved cli help documentation for prediction (commit by @muellerdo)
• 1b8f2bd - DataGenerator: enhanced warning info of passing expected DataGenerator parameters (commit by @muellerdo)
• 8ecce74 - DataGenerator: added passing of model meta parameters to DataGenerator examples - closes #149 (commit by @muellerdo)
• 2d3a589 - AutoML: added documentation base structure for AutoML (commit by @muellerdo)
• faf7d26 - README: Updated README quick start example (commit by @muellerdo)
• 1604fa1 - AutoML: started on AutoML quick start docs (commit by @muellerdo)
• 333677d - AutoML: added AutoML Quick Start & updated framework Quick Start (commit by @muellerdo)
• fcebb7b - AutoML: refactoring AutoML docs structure (commit by @muellerdo)
• 045c1c9 - Roadmap: updated status by adding AutoML support (commit by @muellerdo)
• fbffc3b - AutoML: updated installation docs (commit by @muellerdo)
• 75b724d - AutoML: added Dataset description for AutoML (commit by @muellerdo)
• 07debab - AutoML: fixed a broken image link in AutoML Dataset (commit by @muellerdo)
• 5ed641a - AutoML: added AutoML overview page (commit by @muellerdo)
• 813cae2 - AutoML: added docs for AutoML parameters (commit by @muellerdo)
• 6e66125 - AutoML: implemented introductions to AutoML interfaces Docker & CLI (commit by @muellerdo)
• bdd4581 - Metaleaner: added warning about multi-label support to Metalearner submodule (commit by @muellerdo)
• e6348e5 - Ensemble: added warnings for automatic DataGenerator parameter estimation in Stacking & Composite (commit by @muellerdo)
• b569043 - AutoML: added usage page for AutoML CLI (commit by @muellerdo)
• 6a42c24 - AutoML: changed code block formats (commit by @muellerdo)
• 729fc1b - AutoML: implemented AutoML usage docs for Docker (commit by @muellerdo)
• 4421c99 - AutoML: changed file structure visualization in AutoML usage docs for CLI (commit by @muellerdo)
• b4048dc - Examples: updated docs for examples (commit by @muellerdo)
• 1be3a93 - AutoML: added documentation for AutoML API reference (commit by @muellerdo)
• 3593d79 - Roadmap: checked AutoML docs as milestone on roadmap (commit by @muellerdo)
• fe557d1 - IO_Loader: fixed mapping of io loader to description in table (commit by @muellerdo)