Updating workflows/proteomics/clinicalmp/clinicalmp-verification from…

… 0.1 to 0.2
galaxyproject · Dec 16, 2024 · afb7ff0 · afb7ff0
1 parent 7c7c341
commit afb7ff0
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Showing 2 changed files with 17 additions and 12 deletions.
diff --git a/workflows/proteomics/clinicalmp/clinicalmp-verification/CHANGELOG.md b/workflows/proteomics/clinicalmp/clinicalmp-verification/CHANGELOG.md
@@ -1,4 +1,9 @@
-# Changelog
-
-## [0.1] 2024-11-19
-First release.
+# Changelog
+
+## [0.2] 2024-12-16
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.4.0` was updated to `toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.5.0`
+
+## [0.1] 2024-11-19
+First release.
diff --git a/workflows/proteomics/clinicalmp/clinicalmp-verification/clinicalmp-verification.ga b/workflows/proteomics/clinicalmp/clinicalmp-verification/clinicalmp-verification.ga
@@ -12,7 +12,7 @@
     "format-version": "0.1",
     "license": "CC-BY-4.0",
     "name": "Clinical Metaproteomics Verification Workflow",
-    "release": "0.1",
+    "release": "0.2",
     "report": {
         "markdown": "\n# Workflow Execution Report\n\n## Workflow Inputs\n```galaxy\ninvocation_inputs()\n```\n\n## Workflow Outputs\n```galaxy\ninvocation_outputs()\n```\n\n## Workflow\n```galaxy\nworkflow_display()\n```\n"
     },
@@ -122,7 +122,7 @@
             "inputs": [
                 {
                     "description": "The MGF files from mass spectrometry data.",
-                    "name": "Input MGFs"
+                    "name": "Tandem Mass Spectrometry (MS/MS) datasets"
                 }
             ],
             "label": "Tandem Mass Spectrometry (MS/MS) datasets",
@@ -822,7 +822,7 @@
         },
         "21": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.4.0",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.5.0",
             "errors": null,
             "id": 21,
             "input_connections": {
@@ -850,15 +850,15 @@
                 "top": 1098.0954229032784
             },
             "post_job_actions": {},
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.4.0",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.5.0",
             "tool_shed_repository": {
-                "changeset_revision": "a371252a2cf6",
+                "changeset_revision": "4ddc8da62671",
                 "name": "uniprotxml_downloader",
                 "owner": "galaxyp",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
-            "tool_state": "{\"__input_ext\": \"input\", \"__workflow_invocation_uuid__\": \"08a702aa736d11ee91a5001e67d2ec02\", \"chromInfo\": \"/opt/galaxy/tool-data/shared/ucsc/chrom/?.len\", \"format\": \"fasta\", \"input_method\": {\"input_choice\": \"history\", \"__current_case__\": 2, \"id_file\": {\"__class__\": \"ConnectedValue\"}, \"column\": \"1\", \"field\": \"accession\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "2.4.0",
+            "tool_state": "{\"__input_ext\": \"input\", \"__workflow_invocation_uuid__\": \"08a702aa736d11ee91a5001e67d2ec02\", \"chromInfo\": \"/opt/galaxy/tool-data/shared/ucsc/chrom/?.len\", \"format\": \"fasta\", \"format_cond\": {\"format\": \"fasta\", \"__current_case__\": 0}, \"input_method\": {\"input_choice\": \"history\", \"__current_case__\": 2, \"id_file\": {\"__class__\": \"ConnectedValue\"}, \"column\": \"1\", \"field\": \"accession\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+            "tool_version": "2.5.0",
             "type": "tool",
             "uuid": "93ad396e-e41b-4ea8-8d90-c28e0ca1d0c7",
             "when": null,
@@ -931,4 +931,4 @@
     ],
     "uuid": "22302833-4954-4414-8725-d8bf74d6ffd0",
     "version": 2
-}
+}