Adding Seurat version of the PBMC clustering tutorial #5491
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Removing old images to replace with newer ones
we should fix this on the framework side, but this is the quickest way until then
Co-authored-by: Saskia Hiltemann <[email protected]>
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Thanks for the updates @MarisaJL! The current linting error is a new one for me (and not very informative), will investigate what is causing it |
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Hey @MarisaJL ok, had a look at the linting error, and pushed some changes, explanations below (and one TODO for you). Thanks!
Thank you! I'll sort these out and hopefully nothing else will appear!! |
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@MarisaJL thanks a lot! This is a massive tutorial and looks extremely comprehensive, amazing job!
I did another pass and technically it all looks great to me now
Will give one of the @galaxyproject/training-single-cell team a chance to review the scientific content and merge, but from my side this looks good!
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oh, I see now that @pavanvidem already reviewed before, so maybe he can just have a final look and merge? :) |
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I tested locally and it looks super nice with CYOA. Definitely one of most detailed tutorials. Thanks a lot @MarisaJL
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Thank you both! I'm working on another tutorial with lots of cyoa in it, so @shiltemann 's feedback will help me to avoid the same problems there |
This is the Seurat version of the Clustering3k PMBCs with Scanpy tutorial for single cell.