Merge pull request #331 from glotzerlab/update-packages-trunk

Update packages on trunk

.github/workflows/update-packages.yml

@@ -38,7 +38,7 @@ jobs:
       - name: Bump versions in .github/workflows/requirements.txt
         run: pur -r .github/workflows/requirements.txt
       - name: Bump versions in requirements.txt
-        run: pur -r requirements.txt
+        run: pur -r requirements.txt --minor Werkzeug
       - name: Bump versions in requirements-mpi.txt
         run: pur -r requirements-mpi.txt
       - name: Bump versions in requirements-source.txt

packages.yml

@@ -20,7 +20,7 @@ fresnel:
 hoomd:
   ignore: beta,alpha,rc
   repository: https://github.com/glotzerlab/hoomd-blue
-  version: v4.2.0
+  version: v4.2.1
 osu_microbenchmark:
   repository: null
   version: 5.4.1

requirements.txt

@@ -10,6 +10,9 @@ signac==2.1.0
 signac-flow==0.26.1
 signac-dashboard==0.6.0
 
+# transitive dependencies
+Werkzeug==2.3.7
+
 # commonly used packages
 h5py==3.9.0
 jupyter==1.0.0; platform_machine != 'ppc64le'
@@ -27,12 +30,12 @@ statsmodels==0.14.0; platform_machine != 'ppc64le'
 
 
 # test requirements
-hypothesis==6.87.0
+hypothesis==6.87.1
 pytest==7.4.2
 miniball==1.2.0
 sympy==1.12
 tables==3.8.0; platform_machine != 'ppc64le'
-coverage==7.3.1
+coverage==7.3.2
 click==8.1.7
 pytest-cov==4.1.0
 ruamel.yaml==0.17.33

script/crusher/install.sh

@@ -180,7 +180,7 @@ fi
 if [ ! -n "$(ls -d $ROOT/lib/python*/site-packages/hoomd)" ]
 then
 
- git clone --recursive --branch v4.2.0 --depth 1 https://github.com/glotzerlab/hoomd-blue hoomd \
+ git clone --recursive --branch v4.2.1 --depth 1 https://github.com/glotzerlab/hoomd-blue hoomd \
     && cd hoomd \
     && mkdir -p build \
     && cd build \

script/frontier/install.sh

@@ -183,7 +183,7 @@ fi
 if [ ! -n "$(ls -d $ROOT/lib/python*/site-packages/hoomd)" ]
 then
 
- git clone --recursive --branch v4.2.0 --depth 1 https://github.com/glotzerlab/hoomd-blue hoomd \
+ git clone --recursive --branch v4.2.1 --depth 1 https://github.com/glotzerlab/hoomd-blue hoomd \
     && cd hoomd \
     && mkdir -p build \
     && cd build \

script/summit/install.sh

@@ -171,7 +171,7 @@ done <requirements-source-summit.txt
 if [ ! -n "$(ls -d $ROOT/lib/python*/site-packages/hoomd)" ]
 then
 
- git clone --recursive --branch v4.2.0 --depth 1 https://github.com/glotzerlab/hoomd-blue hoomd \
+ git clone --recursive --branch v4.2.1 --depth 1 https://github.com/glotzerlab/hoomd-blue hoomd \
     && cd hoomd \
     && mkdir -p build \
     && cd build \