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use appropriate tests for success, and make sure greta is installed o…
…n R CMD Check
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
on: | ||
push: | ||
branches: [main, master] | ||
branches: | ||
- main | ||
- master | ||
pull_request: | ||
branches: [main, master] | ||
branches: | ||
- main | ||
- master | ||
schedule: | ||
- cron: '1 23 * * Sun' | ||
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name: R-CMD-check | ||
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defaults: | ||
run: | ||
shell: Rscript {0} | ||
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jobs: | ||
R-CMD-check: | ||
runs-on: ${{ matrix.config.os }} | ||
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name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | ||
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name: ${{ matrix.os }}, tf-${{ matrix.tf }}, R-${{ matrix.r}} | ||
timeout-minutes: 30 | ||
strategy: | ||
fail-fast: false | ||
matrix: | ||
config: | ||
- {os: macos-latest, r: 'release'} | ||
- {os: windows-latest, r: 'release'} | ||
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | ||
- {os: ubuntu-latest, r: 'release'} | ||
- {os: ubuntu-latest, r: 'oldrel-1'} | ||
include: | ||
- {os: 'ubuntu-latest' , tf: 'default', r: 'release'} | ||
- {os: 'windows-latest', tf: 'default', r: 'release'} | ||
- {os: 'macOS-latest' , tf: 'default', r: 'release'} | ||
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runs-on: ${{ matrix.os }} | ||
continue-on-error: ${{ matrix.tf == 'nightly' || contains(matrix.tf, 'rc') || matrix.r == 'devel' }} | ||
env: | ||
R_REMOTES_NO_ERRORS_FROM_WARNINGS: 'true' | ||
R_COMPILE_AND_INSTALL_PACKAGES: 'never' | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
R_KEEP_PKG_SOURCE: yes | ||
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steps: | ||
- uses: actions/checkout@v4 | ||
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- uses: r-lib/actions/setup-pandoc@v2 | ||
- uses: actions/checkout@v2 | ||
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- uses: r-lib/actions/setup-r@v2 | ||
id: setup-r | ||
with: | ||
r-version: ${{ matrix.config.r }} | ||
http-user-agent: ${{ matrix.config.http-user-agent }} | ||
r-version: ${{ matrix.r }} | ||
Ncpus: '2L' | ||
use-public-rspm: true | ||
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- uses: r-lib/actions/setup-r-dependencies@v2 | ||
with: | ||
extra-packages: any::rcmdcheck | ||
needs: check | ||
- uses: r-lib/actions/setup-pandoc@v2 | ||
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- name: Get Date | ||
id: get-date | ||
shell: bash | ||
run: | | ||
echo "::set-output name=year-week::$(date -u "+%Y-%U")" | ||
echo "::set-output name=date::$(date -u "+%F")" | ||
- uses: r-lib/actions/check-r-package@v2 | ||
- name: Restore R package cache | ||
uses: actions/cache@v2 | ||
id: r-package-cache | ||
with: | ||
upload-snapshots: true | ||
path: ${{ env.R_LIBS_USER }} | ||
key: ${{ matrix.os }}-${{ steps.setup-r.outputs.installed-r-version }}-${{ steps.get-date.outputs.year-week }}-1 | ||
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- name: Install remotes | ||
if: steps.r-package-cache.outputs.cache-hit != 'true' | ||
run: install.packages("remotes") | ||
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- name: Install system dependencies | ||
if: runner.os == 'Linux' | ||
shell: bash | ||
run: | | ||
. /etc/os-release | ||
while read -r cmd | ||
do | ||
echo "$cmd" | ||
sudo $cmd | ||
done < <(Rscript -e "writeLines(remotes::system_requirements('$ID-$VERSION_ID'))") | ||
- name: Install package + deps | ||
run: remotes::install_local(dependencies = TRUE, force = TRUE) | ||
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- name: Install greta deps | ||
run: | | ||
library(greta) | ||
greta::install_greta_deps(timeout = 50) | ||
- name: Situation Report on greta install | ||
run: greta::greta_sitrep() | ||
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- name: Install rcmdcheck | ||
run: remotes::install_cran("rcmdcheck") | ||
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- name: Check | ||
run: rcmdcheck::rcmdcheck(args = '--no-manual', error_on = 'warning', check_dir = 'check') | ||
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- name: Show testthat output | ||
if: always() | ||
shell: bash | ||
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | ||
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- name: Don't use tar from old Rtools to store the cache | ||
if: ${{ runner.os == 'Windows' && startsWith(steps.install-r.outputs.installed-r-version, '3') }} | ||
shell: bash | ||
run: echo "C:/Program Files/Git/usr/bin" >> $GITHUB_PATH | ||
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- name: Check on single core machine | ||
if: runner.os != 'Windows' | ||
env: | ||
R_PARALLELLY_AVAILABLE_CORES: 1 | ||
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--no-multiarch")) | ||
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- name: Session info | ||
run: | | ||
options(width = 100) | ||
pkgs <- installed.packages()[, "Package"] | ||
sessioninfo::session_info(pkgs, include_base = TRUE) |
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# check_if_formula works | ||
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Code | ||
check_if_formula("potato") | ||
Condition | ||
Error: | ||
! Input must be a formula | ||
We see that `formula` has class, <character>. | ||
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--- | ||
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Code | ||
check_if_formula("y~x") | ||
Condition | ||
Error: | ||
! Input must be a formula | ||
We see that `formula` has class, <character>. | ||
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