Pull in bug fix from bs_call and bump version

heathsc · Jan 29, 2020 · 9ed9206 · 9ed9206
1 parent 7256070
commit 9ed9206
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diff --git a/README.md b/README.md
@@ -75,6 +75,7 @@ Documentation can be found at
 ----------
 Changelog:
 ----------
+    3.4.5 Fix crash when using the -k (keep-mismatch) flag, and fix rare hangs at end of processing
     3.4.4 Sort input bcf files to bcftools concat stage to ensure reproducibility.
     3.4.4 Add extra sort keys when generating pools to ensure stability of pool membership in the event of multiple contigs
           having the same size

diff --git a/gemBS/version.py b/gemBS/version.py
@@ -1,4 +1,4 @@
 __VERSION_MAJOR = "3"
 __VERSION_MINOR = "4"
-__VERSION_SUBMINOR = "4"
+__VERSION_SUBMINOR = "5"
 __VERSION__ = "%s.%s.%s" % (__VERSION_MAJOR, __VERSION_MINOR,__VERSION_SUBMINOR)
diff --git a/tools/bs_call b/tools/bs_call
+8 −4		include/bs_call.h
+3 −21		src/call_genotypes.c
+7 −27		src/get_template_vector.c
+6 −3		src/init_param.c
+19 −17		src/input_sam.c
+2 −2		src/meth_profile.c
+11 −47		src/process.c
+2 −12		src/process_template.c