Code

Reduce number of FMMs#195

Code

Open

isuruf wants to merge 157 commits intoinducer:maininducer/pytential:mainfrom isuruf:stokes_biharmonic3isuruf/pytential:stokes_biharmonic3Copy head branch name to clipboard

+4,244-471

Commits

Commits on Mar 31, 2023

• Stokes/Elasticity using biharmonic/Laplace

  isuruf

  committed
  65d126c

  Copy full SHA for 65d126c

• Point sumpy back to main

  isuruf

  committed
  e4d4e58

  Copy full SHA for e4d4e58

• Add unit tests for pytential.symbolic.pde.system_utils

  isuruf

  committed
  f19dccb

  Copy full SHA for f19dccb

• Throw RuntimeError

  isuruf

  committed
  25a14cb

  Copy full SHA for 25a14cb

• Double back-ticks around IntG

  isuruf

  committed
  f492f6e

  Copy full SHA for f492f6e

• typing

  isuruf

  committed
  ceea82c

  Copy full SHA for ceea82c

• Add an example to convert_target_transformation_to_source

  isuruf

  committed
  8cc7b24

  Copy full SHA for 8cc7b24

• use simpler expression

  isuruf

  committed
  2652ace

  Copy full SHA for 2652ace

• Add abstractmethod

  isuruf

  committed
  81e449a

  Copy full SHA for 81e449a

• abstractmethod

  isuruf

  committed
  3cf612c

  Copy full SHA for 3cf612c

• simplify loops

  isuruf

  committed
  56755c8

  Copy full SHA for 56755c8

• remove unnecessary code

  isuruf

  committed
  4683196

  Copy full SHA for 4683196

• list -> tuple

  isuruf

  committed
  0e1a9b3

  Copy full SHA for 0e1a9b3

• Pass base_kernel in WrapperNaiveOrBiharmonic

  isuruf

  committed
  52b6beb

  Copy full SHA for 52b6beb

• No abstractmethod for apply_stress for now

  isuruf

  committed
  1626131

  Copy full SHA for 1626131

• correct some typos to fix tests

  isuruf

  committed
  5f570f5

  Copy full SHA for 5f570f5

• Fix refactor

  isuruf

  committed
  b0dc563

  Copy full SHA for b0dc563

• Turn StokesletWrapper into a function

  isuruf

  committed
  111b28b

  Copy full SHA for 111b28b

• more testing

  isuruf

  committed
  95466cc

  Copy full SHA for 95466cc

• Fix tests for sympy

  isuruf

  committed
  ae4413a

  Copy full SHA for ae4413a

• rewrite_using_base_kernel for pressure as well

  isuruf

  committed
  b6d4b14

  Copy full SHA for b6d4b14

• test PDE

  isuruf

  committed
  da05129

  Copy full SHA for da05129

• disable biharmonic 3D

  isuruf

  committed
  edc6d90

  Copy full SHA for edc6d90

• update warning message

  isuruf

  committed
  7afaf0d

  Copy full SHA for 7afaf0d

• raise NotImplmentedError when base_kernel is not given

  isuruf

  committed
  d397563

  Copy full SHA for d397563

• laplace works just fine for 2D too

  isuruf

  committed
  d66bd64

  Copy full SHA for d66bd64

• check divergence too

  isuruf

  committed
  d62e336

  Copy full SHA for d62e336

• test laplace 2d too

  isuruf

  committed
  95c06f0

  Copy full SHA for 95c06f0

• remove pylint skips now that __new__ is not used anymore

  isuruf

  committed
  d7cd503

  Copy full SHA for d7cd503

• test elasticity too

  isuruf

  committed
  2658f8b

  Copy full SHA for 2658f8b

• Update docs and remove unnecessary for loop

  isuruf

  committed
  216930c

  Copy full SHA for 216930c

• no need of laplace kernel when nu == 0.5

  isuruf

  committed
  53ac31d

  Copy full SHA for 53ac31d

• update copyright

  isuruf

  committed
  e0fc9ca

  Copy full SHA for e0fc9ca

• store the stresslet in StokesletWrapperYoshida

  isuruf

  committed
  7b3009a

  Copy full SHA for 7b3009a

• nu default

  isuruf

  committed
  a05bcad

  Copy full SHA for a05bcad

• Use sym.SympyToPymbolicMapper

  isuruf

  committed
  55b81aa

  Copy full SHA for 55b81aa

• consistent spacing

  isuruf

  committed
  1b1ce35

  Copy full SHA for 1b1ce35

• fix typo

  isuruf

  committed
  e24feaf

  Copy full SHA for e24feaf

• _get_kernel_expression -> _get_sympy_kernel_expression

  isuruf

  committed
  6474354

  Copy full SHA for 6474354

• improved docstring

  isuruf

  committed
  580045c

  Copy full SHA for 580045c

• Fix tuple types

  isuruf

  committed
  c93371d

  Copy full SHA for c93371d

• improve docstring

  isuruf

  committed
  d803468

  Copy full SHA for d803468

• pep8 naming

  isuruf

  committed
  e16a4c0

  Copy full SHA for e16a4c0

• explain 2D StokesletWrapperYoshida

  isuruf

  committed
  a4178cd

  Copy full SHA for a4178cd

• Fix typo

  isuruf

  committed
  54bc848

  Copy full SHA for 54bc848

• check that the kernel is a derivative when const != 0

  isuruf

  committed
  a9893f9

  Copy full SHA for a9893f9

• Add DOI link

  isuruf

  committed
  0f59312

  Copy full SHA for 0f59312

• Fix formatting

  isuruf

  committed
  8ccd343

  Copy full SHA for 8ccd343

• Make Stokes be a child class of Elasticity

  isuruf

  committed
  1331e9e

  Copy full SHA for 1331e9e

• restore apply_pressure and apply_stress

  isuruf

  committed
  911f42b

  Copy full SHA for 911f42b

• Fix inheritance

  isuruf

  committed
  f05e277

  Copy full SHA for f05e277

• Fix docs

  isuruf

  committed
  1409766

  Copy full SHA for 1409766

• More doc fixes

  isuruf

  committed
  879b278

  Copy full SHA for 879b278

• doc internals

  isuruf

  committed
  7b92763

  Copy full SHA for 7b92763

• Fix formatting

  isuruf

  committed
  affd89d

  Copy full SHA for affd89d

• lu_solve_with_expand -> lu_with_post_division_callback

  isuruf

  committed
  a74f619

  Copy full SHA for a74f619

• Fix default source/target

  Show description for 09c09d5
  isuruf

  committed
  09c09d5

  Copy full SHA for 09c09d5

• Use a different source/target

  isuruf

  committed
  a6f23a0

  Copy full SHA for a6f23a0

• Fix setting geometry

  isuruf

  committed
  e3f61d6

  Copy full SHA for e3f61d6

• document the assumption that potentials are smooth

  isuruf

  committed
  db0d2ff

  Copy full SHA for db0d2ff

• explain the weights

  isuruf

  committed
  623ed44

  Copy full SHA for 623ed44

• get_int_g -> _get_int_g

  isuruf

  committed
  77a87af

  Copy full SHA for 77a87af

• simplify using sym.nodes

  isuruf

  committed
  6d505bc

  Copy full SHA for 6d505bc

• use a better error message

  isuruf

  committed
  f3fa858

  Copy full SHA for f3fa858

• rename convert_int_g_to_base -> rewrite_int_g_using_base_kernel

  isuruf

  committed
  9c711ce

  Copy full SHA for 9c711ce

• warning unknown target kernel

  isuruf

  committed
  75d485e

  Copy full SHA for 75d485e

• add type hints for chop and lu_with_post_division_callback

  isuruf

  committed
  2ac5f30

  Copy full SHA for 2ac5f30

• use sym.nodes

  isuruf

  committed
  1c95bc7

  Copy full SHA for 1c95bc7

• Use StokesletKernel when nu_sym == 0.5

  isuruf

  committed
  d710cd9

  Copy full SHA for d710cd9

• Use DEFAULT_SOURCE

  isuruf

  committed
  3a86bbc

  Copy full SHA for 3a86bbc

• Fix test

  isuruf

  committed
  0c0e651

  Copy full SHA for 0c0e651

• Use _acf

  isuruf

  committed
  cfdd1a5

  Copy full SHA for cfdd1a5

• Stokeslet -> Elasticity

  isuruf

  committed
  7daeaac

  Copy full SHA for 7daeaac

• No need to raise for abstractmethod

  isuruf

  committed
  8ec6583

  Copy full SHA for 8ec6583

• say which unsupported dim

  isuruf

  committed
  57a1824

  Copy full SHA for 57a1824

• create_elasticity -> make_elasticity

  isuruf

  committed
  d5eaad3

  Copy full SHA for d5eaad3

• Fix DOI links and add yoshida method to internals

  isuruf

  committed
  4d45815

  Copy full SHA for 4d45815

• Improve docs about assumptions

  Show description for 926c524
  

  isuruf

  and

  inducer

  committed
  926c524

  Copy full SHA for 926c524

• Fix IntG in docs

  Show description for 7167e6f
  

  isuruf

  and

  inducer

  committed
  7167e6f

  Copy full SHA for 7167e6f

• Fix IntG markup

  isuruf

  committed
  ba915a8

  Copy full SHA for ba915a8

• fix formatting in docstrings

  isuruf

  committed
  522021a

  Copy full SHA for 522021a

• dataclass

  isuruf

  committed
  87c0e92

  Copy full SHA for 87c0e92

• mu_sym -> mu

  isuruf

  committed
  5bfe80b

  Copy full SHA for 5bfe80b

• Use dataclasses

  isuruf

  committed
  51aa009

  Copy full SHA for 51aa009

• Use enum for method

  isuruf

  committed
  c5d9c35

  Copy full SHA for c5d9c35

• make linter happy

  isuruf

  committed
  f2a9ad5

  Copy full SHA for f2a9ad5

• Use laplacian instead of laplace

  isuruf

  committed
  f5f508c

  Copy full SHA for f5f508c

• defaults to a variable named

  isuruf

  committed
  05b4d2c

  Copy full SHA for 05b4d2c

• refactor solve with lu

  isuruf

  committed
  49c6bd3

  Copy full SHA for 49c6bd3

• type annotate base_kernel

  isuruf

  committed
  bd98c02

  Copy full SHA for bd98c02

• warn if translation variant kernel is found and bail

  isuruf

  committed
  6d8039b

  Copy full SHA for 6d8039b

• refactor terms

  isuruf

  committed
  0536475

  Copy full SHA for 0536475

• fix incomplete refactor

  isuruf

  committed
  f74a020

  Copy full SHA for f74a020

• improve commnet

  isuruf

  committed
  dd79bf9

  Copy full SHA for dd79bf9

• integral -> convolution

  isuruf

  committed
  cb2ca1d

  Copy full SHA for cb2ca1d

• fix bad refactor

  isuruf

  committed
  70ad03e

  Copy full SHA for 70ad03e

• pass through postprocess_division

  isuruf

  committed
  917dc45

  Copy full SHA for 917dc45

• use a data class for deriv relation

  isuruf

  committed
  53693d7

  Copy full SHA for 53693d7

• use a dataclass for LUFactorization

  isuruf

  committed
  88d4938

  Copy full SHA for 88d4938

• Fix type annotation

  isuruf

  committed
  b2befb4

  Copy full SHA for b2befb4

• fix tests

  isuruf

  committed
  5ac3ade

  Copy full SHA for 5ac3ade

• avoid creating IntGs with 0 densities

  isuruf

  committed
  9a92de3

  Copy full SHA for 9a92de3

• fix too long line

  isuruf

  committed
  bb3424d

  Copy full SHA for bb3424d

• Try both solutions instead of relying on the symbolic backend

  isuruf

  committed
  ec9760c

  Copy full SHA for ec9760c

• reduce diff

  isuruf

  committed
  cca85fb

  Copy full SHA for cca85fb

• Add a comment about not having spatial constant mapping methods

  Show description for 8a46f4b
  

  isuruf

  and

  inducer

  committed
  8a46f4b

  Copy full SHA for 8a46f4b

• fix bad merge

  isuruf

  committed
  86a516b

  Copy full SHA for 86a516b

• Update warning message

  Show description for 1f6a49d
  

  isuruf

  and

  inducer

  committed
  1f6a49d

  Copy full SHA for 1f6a49d

• explain -1, -1, -1 and 0, 0, 0

  Show description for ae70ec2
  

  isuruf

  and

  inducer

  committed
  ae70ec2

  Copy full SHA for ae70ec2

• operator -> wrapper

  isuruf

  committed
  13b46a5

  Copy full SHA for 13b46a5

• -1 with size dim

  isuruf

  committed
  a604d07

  Copy full SHA for a604d07

• List -> Sequence

  isuruf

  committed
  7190431

  Copy full SHA for 7190431

• unit test for solve_from_lu

  isuruf

  committed
  80040fa

  Copy full SHA for 80040fa

• import Sequence

  isuruf

  committed
  2b591c8

  Copy full SHA for 2b591c8

• Fix applying extra_deriv_dirs

  isuruf

  committed
  ee467cf

  Copy full SHA for ee467cf

• add a test for errors

  isuruf

  committed
  2c32cc3

  Copy full SHA for 2c32cc3

• formatting: 2 blank lines

  isuruf

  committed
  50df2a8

  Copy full SHA for 50df2a8

• simplify matrix

  isuruf

  committed
  201822f

  Copy full SHA for 201822f

• Check using calculus patch as well

  isuruf

  committed
  61349e6

  Copy full SHA for 61349e6

• describe the math

  isuruf

  committed
  684ec66

  Copy full SHA for 684ec66

• mention column of ones in A

  isuruf

  committed
  10e5221

  Copy full SHA for 10e5221

• fix typo

  isuruf

  committed
  79783f8

  Copy full SHA for 79783f8

• Fix misleading naming in test_stokes

  

  inducer

  authored and

  isuruf

  committed
  7d8ef25

  Copy full SHA for 7d8ef25

• Placate flake8-comprehensions

  

  inducer

  authored and

  isuruf

  committed
  7818049

  Copy full SHA for 7818049

• Placate flake8-comprehensions again

  isuruf

  committed
  69931e7

  Copy full SHA for 69931e7

• fix typo

  isuruf

  committed
  180a464

  Copy full SHA for 180a464

• add code to reduce and merge fmms

  isuruf

  committed
  4136c6a

  Copy full SHA for 4136c6a

• introduce hashable_kernel_arg_value

  isuruf

  committed
  7fe98ae

  Copy full SHA for 7fe98ae

• fold duplicates in source kernels

  isuruf

  committed
  02e56b7

  Copy full SHA for 02e56b7

• fix doctests

  isuruf

  committed
  3ef322a

  Copy full SHA for 3ef322a

• Fix op_group_features

  isuruf

  committed
  e3959cd

  Copy full SHA for e3959cd

• add unit tests

  isuruf

  committed
  61be764

  Copy full SHA for 61be764

• support timing_data in BoundExpression

  isuruf

  committed
  4f351c4

  Copy full SHA for 4f351c4

• merge exprs by default in bind

  isuruf

  committed
  7e4a95d

  Copy full SHA for 7e4a95d

• simplify right factor

  isuruf

  committed
  02b3e55

  Copy full SHA for 02b3e55

• don't fail if our method gives a bad answer

  isuruf

  committed
  8521560

  Copy full SHA for 8521560

• Add MindlinOperator

  isuruf

  committed
  30c958b

  Copy full SHA for 30c958b

• add test for mindlin

  isuruf

  committed
  d9801cf

  Copy full SHA for d9801cf

• test that rewriting using biharmonic still gives 2 FMMs for C-image

  isuruf

  committed
  6cc3124

  Copy full SHA for 6cc3124

• Don't simplify unnecessarily

  isuruf

  committed
  33049fd

  Copy full SHA for 33049fd

• fix test failures

  isuruf

  committed
  62230aa

  Copy full SHA for 62230aa

• verbose pytest

  isuruf

  committed
  61a8b5e

  Copy full SHA for 61a8b5e

• nsimplify before groebner

  isuruf

  committed
  4f8e460

  Copy full SHA for 4f8e460

Commits on Apr 4, 2023

• Use the PDE

  isuruf

  committed
  0716f31

  Copy full SHA for 0716f31

• use a minimal genearting set

  isuruf

  committed
  79132c1

  Copy full SHA for 79132c1

• Use in_terms_of_generator instead of LUsolve

  isuruf

  committed
  e79243e

  Copy full SHA for e79243e

• test factoring without PDE

  isuruf

  committed
  6480c5f

  Copy full SHA for 6480c5f

Commits on Apr 5, 2023

• Use more of sympy's syzygy functionality

  isuruf

  committed
  edbbd20

  Copy full SHA for edbbd20

• comment on minimal_generating_set

  isuruf

  committed
  04f6836

  Copy full SHA for 04f6836

• fix for poly being zero

  isuruf

  committed
  b6b3e08

  Copy full SHA for b6b3e08

• fix getting minimal generating set

  isuruf

  committed
  7c50cdc

  Copy full SHA for 7c50cdc

• fix tests

  isuruf

  committed
  5245ce2

  Copy full SHA for 5245ce2

• debug

  isuruf

  committed
  7c0e850

  Copy full SHA for 7c0e850

Commits on Apr 6, 2023

• add Fu et al method

  isuruf

  committed
  714da54

  Copy full SHA for 714da54

• fix test for new pymbolic

  isuruf

  committed
  ce380e9

  Copy full SHA for ce380e9

• Fix big typo

  isuruf

  committed
  9c1fcb4

  Copy full SHA for 9c1fcb4

Commits on Jul 19, 2023

• Merge branch 'main' into stokes_biharmonic3

  isuruf

  authored
  b900990

  Copy full SHA for b900990