Releases: jfnavarro/st_viewer
Releases · jfnavarro/st_viewer
ST Viewer Release
ST Viewer Release
- Windows version working
ST Viewer Release
- Solved an issue with missing spots in MAC OS Catalina
(Windows binaries coming soon)
ST Viewer Release
- Added support for more formats for the spot coordinates file
(Windows binary coming soon)
ST Viewer Release
- Added support for 3D datasets
- Removed R dependencies
- Removed some unuseful functionalities
- Simplified the DEA
- Simplified the normalization and filtering
- Increase in speed (multi-threading and optimizations)
- More robust and efficient
- Added cluster info to spots panel
- Enabled to select spots from spots panel
(Windows Installer coming soon)
ST Viewer Release
(Binaries generated for R 3.4.4 and BioConductor 3.6)
- Fixed bugs
- Bumped SCRAN to newest version
ST Viewer release
* Removed the online support
* Datasets are now loaded manually in different ways
* Added support to include a file with spot coordinates in the dataset
* Added support to include a file with spike-ins in the dataset
* Added support to include a file with normalization factors in the dataset
* Added support to adjust the chip size in the dataset
* Datasets are now working with the latest matrix TSV format
* If no spot coordinates are given the alignment matrix will be computed automatically
* Added a view with the spots to allow: select, show, hide, color, etc...
* Added the total count for the Genes and Spots view
* Added widget to show QC stats
* Added option to load gene colors
* Added option to load spot colors
* Added option to perform clustering on a dataset
* Added option to select based on the clustered spots
* Added lasso selection
* Added option to export/import selections
* Selections are now sub-matrices of a dataset
* Added widget to compute correlation between 2 selections
* Added widget to compute DEA (Differential Expression Analysis) between 2 selections
* Bug fixes and improvements
* UI optimizations
* Speed improvements
* Removed deprecated stuff