3388 allow organisms without consensus sequences #2770
Annotations
6 errors and 1 warning
|
Run tests:
website/src/components/Edit/EditPage.spec.tsx#L60
TestingLibraryElementError: Unable to find an element with the text: /Unaligned nucleotide sequences/i. This could be because the text is broken up by multiple elements. In this case, you can provide a function for your text matcher to make your matcher more flexible.
Ignored nodes: comments, script, style
<body
class="react-confirm-alert-body-element"
>
<svg
class="react-confirm-alert-svg"
id="react-confirm-alert-firm-svg"
>
<filter
id="gaussian-blur"
>
<fegaussianblur
stdDeviation="0.3"
/>
</filter>
</svg>
<div
id="react-confirm-alert"
>
<div
class="react-confirm-alert-overlay undefined"
>
<div
class="react-confirm-alert"
>
<div
class="modal-box"
>
<form
method="dialog"
>
<button
class="btn btn-sm btn-circle btn-ghost absolute right-2 top-2"
>
✕
</button>
</form>
<h3
class="font-bold text-lg"
>
Do you really want to submit?
</h3>
<div
class="flex justify-end gap-4 mt-4"
>
<form
method="dialog"
>
<button
class="btn loculusColor text-white hover:bg-primary-700"
>
Cancel
</button>
</form>
<form
method="dialog"
>
<button
class="btn loculusColor text-white hover:bg-primary-700"
>
Confirm
</button>
</form>
</div>
</div>
</div>
</div>
</div>
<div>
<div
class="flex items-center mb-4"
>
<h1
class="title"
>
Edit
1
.
1
</h1>
</div>
<table
class="customTable"
>
<tbody
class="w-full"
>
<tr
class="h-4"
/>
<tr
class="subtitle"
>
<td
class="font-semibold"
colspan="3"
>
Original Data
</td>
</tr>
<tr>
<td
class="w-1/4"
>
Submission ID:
</td>
<td
class="pr-3 text-right "
/>
<td
class="w-full"
>
defaultSubmitter
</td>
</tr>
<tr
class="h-4"
/>
<tr
class="subtitle"
>
<td
class="font-normal"
colspan="3"
>
Metadata
</td>
</tr>
<tr
class="table-fixed w-full"
>
<div>
<td
class="w-1/4 relative text-red-600"
data-tooltip-id="field-tooltiporiginalMetaDataField"
>
Original meta data field
:
</td>
</div>
<td
class="pr-3 text-right "
>
<div
class="tooltip tooltip-error whitespace-pre-line text-error"
data-tip="errorMessage"
>
<svg
height="1.2em"
viewBox="0 0 24 24"
width="1.2em"
>
<path
d="M9.1 5L5 9.1v5.8L9.1 19h5.8l4.1-4.1V9.1L14.9 5zm7.14 9.83l-1.41 1.41L12 13.41l-2.83 2.83l-1.41-1.41L10.59 12L7.76 9.17l1.41-1.41L12 10.59l2.83-2.83l1.41 1.41L13.41 12z"
fill="currentColor"
opacity="0.3"
/>
<path
d="M15.73 3H8.27L3 8.27v7.46L8.27 21h7.46L21 15.73V8.27zM19 14.9L14.9 19H9.1L5 14.9V9.1L9.1 5h5.8L19 9.1zm-4.17-7.14L12 10.59L9.17 7.76L7.76 9.17L10.59 12l-2.83 2.83l1.41 1.41L12 13.41l2.83 2.83l1.41-1.41L13.41 12l2.83-2.83z"
fill="currentColor"
/>
</svg>
</div>
<div
|
|
Run tests:
website/src/components/Submission/SubmissionForm.spec.tsx#L79
TestingLibraryElementError: Unable to find a label with the text of: /Sequence File/i
Ignored nodes: comments, script, style
<body>
<div>
<div
class="flex flex-col items-center"
>
<div
class="text-left mt-3 max-w-6xl"
>
<div
class="flex-col flex gap-8 divide-y"
>
<div
class="grid sm:grid-cols-3 gap-x-16"
>
<div
class=""
>
<h2
class="font-medium text-lg"
>
Metadata
</h2>
<p
class="text-gray-500 text-sm"
>
Select your
metadata files
</p>
<p
class="text-gray-400 text-xs mt-5"
>
The documentation pages contain more details on the required
<a
class="text-primary-700 opacity-90"
href="/docs/concepts/metadataformat"
>
metadata format
</a>
. You can download
<a
class="text-primary-700 opacity-90"
href="/testOrganism/submission/template?format=submit"
>
a template
</a>
for the TSV metadata file with column headings.
</p>
<p
class="text-gray-400 text-xs mt-3"
>
Files can optionally be compressed, with the appropriate extension (
<i>
.zst
</i>
,
<i>
.gz
</i>
,
<i>
.zip
</i>
,
<i>
.xz
</i>
). For more information please refer to the
<a
class="text-primary-700 opacity-90"
href="https://loculus.org/for-users/submit-sequences/"
>
help pages
</a>
.
</p>
</div>
<form
class="sm:col-span-2"
>
<div
class="flex flex-col lg:flex-row gap-6"
>
<div
class="w-60 space-y-2"
>
<label
class="text-gray-900 font-medium text-sm block"
>
Metadata File
</label>
<div
class="flex flex-col h-40 rounded-lg border border-hidden "
>
<svg
aria-hidden="true"
class="mx-auto mt-4 mb-0 h-12 w-12 text-gray-300"
height="1.2em"
viewBox="0 0 24 24"
width="1.2em"
>
<path
d="M5.616 20q-.691 0-1.153-.462T4 18.384V5.616q0-.691.463-1.153T5.616 4h12.769q.69 0 1.153.463T20 5.616v12.769q0 .69-.462 1.153T18.384 20zM5 8.998h14V5.616q0-.231-.192-.424T18.384 5H5.616q-.231 0-.424.192T5 5.616zm0 5.004h14V9.998H5zM5.616 19h12.769q.23 0 .423-.192t.192-.424v-3.382H5v3.382q0 .231.192.424t.423.192M6.77 7.804V6.188h1.615v1.616zm0 5.004v-1.616h1.615v1.616zm0 5.003v-1.615h1.615v1.615z"
fill="currentColor"
/>
</svg>
<div
class="flex flex-col items-center justify-center text-center flex-1 px-4 py-2"
>
<div
class="text-sm text-gray-500 mb-1"
>
metadata.tsv
</div>
<button
class="text-xs break-words
|
|
Run tests:
website/src/components/Submission/SubmissionForm.spec.tsx#L103
AssertionError: expected "spy" to be called with arguments: [ StringContaining{…}, …(1) ]
Received:
Number of calls: 0
Ignored nodes: comments, script, style
<html>
<head />
<body>
<div>
<div
class="flex flex-col items-center"
>
<div
class="text-left mt-3 max-w-6xl"
>
<div
class="flex-col flex gap-8 divide-y"
>
<div
class="grid sm:grid-cols-3 gap-x-16"
>
<div
class=""
>
<h2
class="font-medium text-lg"
>
Metadata
</h2>
<p
class="text-gray-500 text-sm"
>
Select your
metadata files
</p>
<p
class="text-gray-400 text-xs mt-5"
>
The documentation pages contain more details on the required
<a
class="text-primary-700 opacity-90"
href="/docs/concepts/metadataformat"
>
metadata format
</a>
. You can download
<a
class="text-primary-700 opacity-90"
href="/testOrganism/submission/template?format=submit"
>
a template
</a>
for the TSV metadata file with column headings.
</p>
<p
class="text-gray-400 text-xs mt-3"
>
Files can optionally be compressed, with the appropriate extension (
<i>
.zst
</i>
,
<i>
.gz
</i>
,
<i>
.zip
</i>
,
<i>
.xz
</i>
). For more information please refer to the
<a
class="text-primary-700 opacity-90"
href="https://loculus.org/for-users/submit-sequences/"
>
help pages
</a>
.
</p>
</div>
<form
class="sm:col-span-2"
>
<div
class="flex flex-col lg:flex-row gap-6"
>
<div
class="w-60 space-y-2"
>
<label
class="text-gray-900 font-medium text-sm block"
>
Metadata File
</label>
<div
class="flex flex-col h-40 rounded-lg border border-hidden "
>
<svg
aria-hidden="true"
class="mx-auto mt-4 mb-0 h-12 w-12 text-gray-300"
height="1.2em"
viewBox="0 0 24 24"
width="1.2em"
>
<path
d="M5.616 20q-.691 0-1.153-.462T4 18.384V5.616q0-.691.463-1.153T5.616 4h12.769q.69 0 1.153.463T20 5.616v12.769q0 .69-.462 1.153T18.384 20zM5 8.998h14V5.616q0-.231-.192-.424T18.384 5H5.616q-.231 0-.424.192T5 5.616zm0 5.004h14V9.998H5zM5.616 19h12.769q.23 0 .423-.192t.192-.424v-3.382H5v3.382q0 .231.192.424t.423.192M6.77 7.804V6.188h1.615v1.616zm0 5.004v-1.616h1.615v1.616zm0 5.003v-1.615h1.615v1.615z"
fill="currentColor"
/>
</svg>
<div
class="flex flex-col items-center justify-center text-center flex-1 px-4 py-
|
|
Run tests:
website/src/components/Submission/SubmissionForm.spec.tsx#L165
TestingLibraryElementError: Unable to find a label with the text of: /Sequence file/i
Ignored nodes: comments, script, style
<body>
<div>
<div
class="flex flex-col items-center"
>
<div
class="text-left mt-3 max-w-6xl"
>
<div
class="flex-col flex gap-8 divide-y"
>
<div
class="grid sm:grid-cols-3 gap-x-16"
>
<div
class=""
>
<h2
class="font-medium text-lg"
>
Metadata
</h2>
<p
class="text-gray-500 text-sm"
>
Select your
metadata files
</p>
<p
class="text-gray-400 text-xs mt-5"
>
The documentation pages contain more details on the required
<a
class="text-primary-700 opacity-90"
href="/docs/concepts/metadataformat"
>
metadata format
</a>
. You can download
<a
class="text-primary-700 opacity-90"
href="/testOrganism/submission/template?format=submit"
>
a template
</a>
for the TSV metadata file with column headings.
</p>
<p
class="text-gray-400 text-xs mt-3"
>
Files can optionally be compressed, with the appropriate extension (
<i>
.zst
</i>
,
<i>
.gz
</i>
,
<i>
.zip
</i>
,
<i>
.xz
</i>
). For more information please refer to the
<a
class="text-primary-700 opacity-90"
href="https://loculus.org/for-users/submit-sequences/"
>
help pages
</a>
.
</p>
</div>
<form
class="sm:col-span-2"
>
<div
class="flex flex-col lg:flex-row gap-6"
>
<div
class="w-60 space-y-2"
>
<label
class="text-gray-900 font-medium text-sm block"
>
Metadata File
</label>
<div
class="flex flex-col h-40 rounded-lg border border-hidden "
>
<svg
aria-hidden="true"
class="mx-auto mt-4 mb-0 h-12 w-12 text-gray-300"
height="1.2em"
viewBox="0 0 24 24"
width="1.2em"
>
<path
d="M5.616 20q-.691 0-1.153-.462T4 18.384V5.616q0-.691.463-1.153T5.616 4h12.769q.69 0 1.153.463T20 5.616v12.769q0 .69-.462 1.153T18.384 20zM5 8.998h14V5.616q0-.231-.192-.424T18.384 5H5.616q-.231 0-.424.192T5 5.616zm0 5.004h14V9.998H5zM5.616 19h12.769q.23 0 .423-.192t.192-.424v-3.382H5v3.382q0 .231.192.424t.423.192M6.77 7.804V6.188h1.615v1.616zm0 5.004v-1.616h1.615v1.616zm0 5.003v-1.615h1.615v1.615z"
fill="currentColor"
/>
</svg>
<div
class="flex flex-col items-center justify-center text-center flex-1 px-4 py-2"
>
<div
class="text-sm text-gray-500 mb-1"
>
metadata.tsv
</div>
<button
class="text-xs break-words
|
|
Run tests:
website/src/components/Submission/SubmissionForm.spec.tsx#L165
TestingLibraryElementError: Unable to find a label with the text of: /Sequence file/i
Ignored nodes: comments, script, style
<body>
<div>
<div
class="flex flex-col items-center"
>
<div
class="text-left mt-3 max-w-6xl"
>
<div
class="flex-col flex gap-8 divide-y"
>
<div
class="grid sm:grid-cols-3 gap-x-16"
>
<div
class=""
>
<h2
class="font-medium text-lg"
>
Metadata
</h2>
<p
class="text-gray-500 text-sm"
>
Select your
metadata files
</p>
<p
class="text-gray-400 text-xs mt-5"
>
The documentation pages contain more details on the required
<a
class="text-primary-700 opacity-90"
href="/docs/concepts/metadataformat"
>
metadata format
</a>
. You can download
<a
class="text-primary-700 opacity-90"
href="/testOrganism/submission/template?format=submit"
>
a template
</a>
for the TSV metadata file with column headings.
</p>
<p
class="text-gray-400 text-xs mt-3"
>
Files can optionally be compressed, with the appropriate extension (
<i>
.zst
</i>
,
<i>
.gz
</i>
,
<i>
.zip
</i>
,
<i>
.xz
</i>
). For more information please refer to the
<a
class="text-primary-700 opacity-90"
href="https://loculus.org/for-users/submit-sequences/"
>
help pages
</a>
.
</p>
</div>
<form
class="sm:col-span-2"
>
<div
class="flex flex-col lg:flex-row gap-6"
>
<div
class="w-60 space-y-2"
>
<label
class="text-gray-900 font-medium text-sm block"
>
Metadata File
</label>
<div
class="flex flex-col h-40 rounded-lg border border-hidden "
>
<svg
aria-hidden="true"
class="mx-auto mt-4 mb-0 h-12 w-12 text-gray-300"
height="1.2em"
viewBox="0 0 24 24"
width="1.2em"
>
<path
d="M5.616 20q-.691 0-1.153-.462T4 18.384V5.616q0-.691.463-1.153T5.616 4h12.769q.69 0 1.153.463T20 5.616v12.769q0 .69-.462 1.153T18.384 20zM5 8.998h14V5.616q0-.231-.192-.424T18.384 5H5.616q-.231 0-.424.192T5 5.616zm0 5.004h14V9.998H5zM5.616 19h12.769q.23 0 .423-.192t.192-.424v-3.382H5v3.382q0 .231.192.424t.423.192M6.77 7.804V6.188h1.615v1.616zm0 5.004v-1.616h1.615v1.616zm0 5.003v-1.615h1.615v1.615z"
fill="currentColor"
/>
</svg>
<div
class="flex flex-col items-center justify-center text-center flex-1 px-4 py-2"
>
<div
class="text-sm text-gray-500 mb-1"
>
metadata.tsv
</div>
<button
class="text-xs break-words
|
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Run tests
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