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PeerHerholz committed May 22, 2023
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2 changes: 1 addition & 1 deletion .buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 00763591344d69343f6e7aff41b556d8
config: f605d10148b9ecb01899162702e61712
tags: 645f666f9bcd5a90fca523b33c5a78b7
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4 changes: 2 additions & 2 deletions _sources/intro.md
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Expand Up @@ -55,7 +55,7 @@ More information and their application can be found in the respective sections o
:margin: 3
:class-body: text-center
:class-header: bg-light text-center
:link: https://main-educational.github.io/brain_decoding/haxby_data.html
:link: https://main-educational.github.io/brain_encoding_decoding/haxby_data.html
**An overview of the Haxby Dataset**
^^^
```{image} https://main-educational.github.io/brain_encoding_decoding/_images/haxby_data_52_0.png
Expand Down Expand Up @@ -290,4 +290,4 @@ The tutorial is rendered here using [Jupyter Book](https://github.com/jupyter/ju
:filter: docname in docnames
```
---
<!-- #endregion -->
<!-- #endregion -->
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},
'fr' : {
'copy': 'Copier',
'copy_to_clipboard': 'Copié dans le presse-papier',
'copy_to_clipboard': 'Copier dans le presse-papier',
'copy_success': 'Copié !',
'copy_failure': 'Échec de la copie',
},
Expand Down Expand Up @@ -224,7 +224,7 @@ var copyTargetText = (trigger) => {
var target = document.querySelector(trigger.attributes['data-clipboard-target'].value);

// get filtered text
let exclude = '.linenos, .gp';
let exclude = '.linenos';

let text = filterText(target, exclude);
return formatCopyText(text, '', false, true, true, true, '', '')
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418 changes: 217 additions & 201 deletions gcn_decoding.html

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<link rel="stylesheet" type="text/css" href="_static/sphinx-thebe.css" />
<link rel="stylesheet" type="text/css" href="_static/panels-main.c949a650a448cc0ae9fd3441c0e17fb0.css" />
<link rel="stylesheet" type="text/css" href="_static/panels-variables.06eb56fa6e07937060861dad626602ad.css" />
<link rel="stylesheet" type="text/css" href="_static/design-style.4045f2051d55cab465a707391d5b2007.min.css" />
<link rel="stylesheet" type="text/css" href="_static/design-style.1e8bd061cd6da7fc9cf755528e8ffc24.min.css" />

<link rel="preload" as="script" href="_static/js/index.be7d3bbb2ef33a8344ce.js">

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33 changes: 17 additions & 16 deletions intro.html
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<link rel="stylesheet" type="text/css" href="_static/sphinx-thebe.css" />
<link rel="stylesheet" type="text/css" href="_static/panels-main.c949a650a448cc0ae9fd3441c0e17fb0.css" />
<link rel="stylesheet" type="text/css" href="_static/panels-variables.06eb56fa6e07937060861dad626602ad.css" />
<link rel="stylesheet" type="text/css" href="_static/design-style.4045f2051d55cab465a707391d5b2007.min.css" />
<link rel="stylesheet" type="text/css" href="_static/design-style.1e8bd061cd6da7fc9cf755528e8ffc24.min.css" />

<link rel="preload" as="script" href="_static/js/index.be7d3bbb2ef33a8344ce.js">

Expand Down Expand Up @@ -339,7 +339,7 @@ <h2>Brain decoding vs. encoding<a class="headerlink" href="#brain-decoding-vs-en
<div class="sd-card-footer docutils">
<p class="sd-card-text">Explore this tutorial <span class="fas fa-arrow-right"></span></p>
</div>
<a class="sd-stretched-link reference external" href="https://main-educational.github.io/brain_decoding/haxby_data.html"></a></div>
<a class="sd-stretched-link reference external" href="https://main-educational.github.io/brain_encoding_decoding/haxby_data.html"></a></div>
<div class="sd-card sd-sphinx-override sd-m-3 sd-shadow-sm sd-card-hover docutils">
<div class="sd-card-header bg-light text-center docutils">
<p class="sd-card-text"><strong>Brain decoding with SVM</strong></p>
Expand Down Expand Up @@ -411,33 +411,33 @@ <h2>Setup<a class="headerlink" href="#setup" title="Permalink to this headline">
<p>After making sure you have a working <code class="docutils literal notranslate"><span class="pre">python</span> <span class="pre">installation</span></code>, you need to get the <code class="docutils literal notranslate"><span class="pre">content</span></code> that is going to presented during the tutorial. In more detail, this is done via interactive <code class="docutils literal notranslate"><span class="pre">jupyter</span> <span class="pre">notebooks</span></code> which you can obtain by following the steps below:</p>
<ol>
<li><p>Clone/download this repository to your machine and navigate to the directory.</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>git clone https://github.com/main-educational/brain_encoding_decoding.git
<span class="nb">cd</span> brain_encoding_decoding
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>git<span class="w"> </span>clone<span class="w"> </span>https://github.com/main-educational/brain_encoding_decoding.git
<span class="nb">cd</span><span class="w"> </span>brain_encoding_decoding
</pre></div>
</div>
</li>
<li><p>We encourage you to use a <code class="docutils literal notranslate"><span class="pre">virtual</span> <span class="pre">environment</span></code> for this tutorial
(and for all your projects, that’s a good practice).
To do this, run the following commands in your terminal, it will create the
<code class="docutils literal notranslate"><span class="pre">environment</span></code> in a folder named <code class="docutils literal notranslate"><span class="pre">env_tuto</span></code>:</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>python3 -m venv env_tuto
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>python3<span class="w"> </span>-m<span class="w"> </span>venv<span class="w"> </span>env_tuto
</pre></div>
</div>
<p>Then the following <code class="docutils literal notranslate"><span class="pre">command</span></code> will <code class="docutils literal notranslate"><span class="pre">activate</span></code> the <code class="docutils literal notranslate"><span class="pre">environment</span></code>:</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="nb">source</span> env_tuto/bin/activate
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="nb">source</span><span class="w"> </span>env_tuto/bin/activate
</pre></div>
</div>
<p>Finally, you can install the required <code class="docutils literal notranslate"><span class="pre">libraries</span></code>:</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pip install -r binder/requirements.txt
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>pip<span class="w"> </span>install<span class="w"> </span>-r<span class="w"> </span>binder/requirements.txt
</pre></div>
</div>
</li>
<li><p>Navigate to the <code class="docutils literal notranslate"><span class="pre">content</span></code> of the <code class="docutils literal notranslate"><span class="pre">jupyter</span> <span class="pre">book</span></code>:</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="nb">cd</span> content/
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="nb">cd</span><span class="w"> </span>content/
</pre></div>
</div>
<p>Now that you are all set, you can run the notebooks with the command:</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>jupyter notebook
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>jupyter<span class="w"> </span>notebook
</pre></div>
</div>
<p>Click on the <code class="docutils literal notranslate"><span class="pre">.md</span></code> files. They will be rendered as jupyter notebooks 🎉</p>
Expand All @@ -462,21 +462,21 @@ <h2>Instructors<a class="headerlink" href="#instructors" title="Permalink to thi
<p>This tutorial was prepared and presented by</p>
<div class="sd-sphinx-override sd-cards-carousel sd-card-cols-3 docutils">
<div class="sd-card sd-sphinx-override sd-m-1 sd-shadow-sm sd-card-hover docutils">
<img alt="card-img-top" class="sd-card-img-top" src="https://avatars.githubusercontent.com/u/20129524?v=4?s=100" />
<img alt="" class="sd-card-img-top" src="https://avatars.githubusercontent.com/u/20129524?v=4?s=100" />
<div class="sd-card-body text-center docutils">
<div class="sd-card-title sd-font-weight-bold docutils">
Peer Herholz</div>
</div>
<a class="sd-stretched-link reference external" href="https://github.com/PeerHerholz"></a></div>
<div class="sd-card sd-sphinx-override sd-m-3 sd-shadow-sm sd-card-hover docutils">
<img alt="card-img-top" class="sd-card-img-top" src="https://avatars.githubusercontent.com/u/64853244?v=4" />
<img alt="" class="sd-card-img-top" src="https://avatars.githubusercontent.com/u/64853244?v=4" />
<div class="sd-card-body text-center docutils">
<div class="sd-card-title sd-font-weight-bold docutils">
Shima Rastegarnia</div>
</div>
<a class="sd-stretched-link reference external" href="https://github.com/srastegarnia"></a></div>
<div class="sd-card sd-sphinx-override sd-m-3 sd-shadow-sm sd-card-hover docutils">
<img alt="card-img-top" class="sd-card-img-top" src="https://pbs.twimg.com/profile_images/1347298788382273536/r9JpUkVT_400x400.jpg" />
<img alt="" class="sd-card-img-top" src="https://pbs.twimg.com/profile_images/1347298788382273536/r9JpUkVT_400x400.jpg" />
<div class="sd-card-body text-center docutils">
<div class="sd-card-title sd-font-weight-bold docutils">
Bertrand Thirion</div>
Expand All @@ -485,21 +485,21 @@ <h2>Instructors<a class="headerlink" href="#instructors" title="Permalink to thi
</div>
<div class="sd-sphinx-override sd-cards-carousel sd-card-cols-3 docutils">
<div class="sd-card sd-sphinx-override sd-m-3 sd-shadow-sm sd-card-hover docutils">
<img alt="card-img-top" class="sd-card-img-top" src="https://avatars.githubusercontent.com/u/45263281?v=4" />
<img alt="" class="sd-card-img-top" src="https://avatars.githubusercontent.com/u/45263281?v=4" />
<div class="sd-card-body text-center docutils">
<div class="sd-card-title sd-font-weight-bold docutils">
Isil Bilgin</div>
</div>
<a class="sd-stretched-link reference external" href="https://github.com/complexbrains"></a></div>
<div class="sd-card sd-sphinx-override sd-m-3 sd-shadow-sm sd-card-hover docutils">
<img alt="card-img-top" class="sd-card-img-top" src="https://pbs.twimg.com/profile_images/1542505896386764800/pyC2rgHp_400x400.jpg" />
<img alt="" class="sd-card-img-top" src="https://pbs.twimg.com/profile_images/1542505896386764800/pyC2rgHp_400x400.jpg" />
<div class="sd-card-body text-center docutils">
<div class="sd-card-title sd-font-weight-bold docutils">
Alexandre Pasquiou</div>
</div>
<a class="sd-stretched-link reference external" href="https://twitter.com/a_pasquiou"></a></div>
<div class="sd-card sd-sphinx-override sd-m-3 sd-shadow-sm sd-card-hover docutils">
<img alt="card-img-top" class="sd-card-img-top" src="https://avatars.githubusercontent.com/u/13696562?v=4" />
<img alt="" class="sd-card-img-top" src="https://avatars.githubusercontent.com/u/13696562?v=4" />
<div class="sd-card-body text-center docutils">
<div class="sd-card-title sd-font-weight-bold docutils">
Pravish Sainath</div>
Expand Down Expand Up @@ -528,7 +528,8 @@ <h2>References<a class="headerlink" href="#references" title="Permalink to this
</dl>
</p>
<hr class="docutils" />
<!-- #endregion --></div>
<!-- #endregion -->
</div>
<div class="toctree-wrapper compound">
</div>
</div>
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