Merge pull request conda-forge#28498 from hpdcj/main

Create recipe for hpv-meta in version 1.0 for conda-forge.

recipes/hpv-kite/build.sh

@@ -0,0 +1,31 @@
+#!/bin/bash
+
+# Stop on error
+set -o errexit
+
+# add dependency-license-report plugin
+sed -i "s/^\(\s*\)id 'java'/&\n\1id 'com.github.jk1.dependency-license-report' version 'latest.release'/" build.gradle
+
+# build package with hpv-kite
+chmod +x ./gradlew
+./gradlew clean build jar createDependenciesJar
+./gradlew generateLicenseReport
+
+# create destination folder for conda command and the libraries
+mkdir -p $PREFIX/bin/
+mkdir -p $PREFIX/libexec/hpv-kite/
+
+# copy jar files into output dir
+cp build/libs/*.jar $PREFIX/libexec/hpv-kite/
+
+# create executable scripts
+tee ${PREFIX}/bin/hpv-kite << EOF
+#!/bin/sh
+exec \${JAVA_HOME}/bin/java -jar \${CONDA_PREFIX}/libexec/hpv-kite/hpv-kite-${PKG_VERSION}.jar "\$@"
+EOF
+
+tee ${PREFIX}/bin/hpv-kite.cmd << EOF
+call %JAVA_HOME%\bin\java -jar %CONDA_PREFIX%\libexec\hpv-kite\hpv-kite-${PKG_VERSION}.jar %*
+EOF
+
+chmod +x $PREFIX/bin/hpv-kite

recipes/hpv-kite/meta.yaml

@@ -0,0 +1,45 @@
+{% set name = "hpv-kite" %}
+{% set version = "1.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/hpdcj/HPV-KITE/archive/refs/tags/{{ version }}.tar.gz
+  sha256: e928ceb741b4b1fd3ade33e6204530e5998c4b5091f4a9d7f2e094bdef897ec7
+
+build:
+  noarch: generic
+  number: 0
+
+requirements:
+  build:
+    - openjdk =21
+    - sed
+  run:
+    - openjdk >=17
+
+test:
+  commands:
+    - hpv-kite
+
+about:
+  home: https://github.com/hpdcj/HPV-KITE
+  summary: "HPV-Kite: HPV K-mer Index Tversky Estimator application"
+  description: |
+    HPV-Kite is a Java application that detects HPV within samples.
+    It can be used for DNA and/or RNA FASTQ files.
+    KITE stands for K-mer Index Tversky Estimator, as the application leverages
+    k-mer analysis combined with the Tversky index.
+    HPV-Kite not only expedites viral detection but also maintains comparable
+    sensitivity to existing approaches.
+  license: BSD-3-Clause
+  license_file: 
+    - LICENSE
+    - build/reports/dependency-license/ 
+
+
+extra:
+  recipe-maintainers:
+    - faramir