packer dna to fasta

packer-dna-to-fasta

Description

Script packs all "SPAdes-like" .dna files in contigs directory to single multi-fasta file 'packed_dna.fasta'.

"SPAdes-like" means that name of file is of following format: NODE_1_length_61704_cov_114.517.dna

Dependencies

The script is written in Python, so you need Python interpreter (version 3.X) to use it. Here you can download Python.

Options

-h (--help): print help message;

-v (--version): print version;

Usage:

Just run it in directory, where folder contigs is located

python3 packer-dna-to-fasta.py