Added features
GitHub Actions testing scheme
- Download and subset test datasets from ENCODE. Test data is ATAC-Seq of adrenal glands of people aged 59 and 16, 2 replicates each condition. Subset the FASTQs to 4 M reads per read per biological replicate.
- Git clone the repo
- Install miniconda and custom snakemake env (5.32) with plotly
- Activate conda environment and gather basic intel
- Snakemake dry run + create pipeline environments
- Activate bwa env and make index of hg38 chr 1.
- Run SnakeMake.