Process Data Sharing StepByStep v0.3.1

Centralized Analysis (Project VHF-MI-2-zentral):

Prerequisites:

Steps:

Execute the provided Data Selection, Extraction, Pseudonymisation and Bundleing Script using the following Configuration Options in the .env file:
- Use the the option --storebundle for the parameter MII_DATA_EXTRACTION_STORE_BUNDLE.
- Use VHF-MI-2-zentral as project identifier for the parameter MII_DATA_EXTRACTION_PROJ_IDENT.
- Use your DSF Organization identifier for the parameter MII_DATA_EXTRACTION_ORG_IDENT.
- Make sure that MII_DATA_EXTRACTION_FHIR_BASE_URL corresponds to the data-sharing process configuration option DE_MEDIZININFORMATIK_INITIATIVE_KDS_FHIR_SERVER_BASE_URL.
Execute the steps to Release Data by Answering a Manual User Task on your DSF FHIR server via web browser.

Prerequisites:

The FDPG initiated the DSF process for data-sharing.
Successfully executed R-Scripts
- VHF-MI-dezentral: R-scripts (retrieval and analysis) of the VHF-MI-dezentral project, leading to a results-folder (outputGlobal) that should be transmitted.
- WE-STORM: R scripts of the WE-STORM project, leading to a results-folder (results) that should be transmitted.

Steps:

Create a ZIP file of the results-folder, e.g. using the command zip -r /path/to/results-folder.zip /path/to/results-folder.
Create a Base64 representation of the results-folder ZIP file, e.g. using the command base64 /path/to/results-folder.zip.
Prepare your KDS FHIR store by customizing the provided Bundle template:
- Add the Base64 representation to the corresponding placeholder.
- Replace all other remaining placeholders.
- Upload the prepared Bundle to your KDS FHIR store, whose base-URL corresponds to the data-sharing process configuration option DE_MEDIZININFORMATIK_INITIATIVE_KDS_FHIR_SERVER_BASE_URL.
Execute the steps to Release Data by Answering a Manual User Task on your DSF FHIR server via web browser.