wip

miraisolutions · Jan 15, 2024 · 3f9fa9f · 3f9fa9f
1 parent 693923e
commit 3f9fa9f
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/.github/workflows/ci-cd-renv.yml b/.github/workflows/ci-cd-renv.yml
@@ -60,8 +60,10 @@ jobs:
 
       - name: Install system dependencies
         run: |
-          pak::sysreqs_check_installed(names(jsonlite::read_json("renv.lock")$Packages))
-          pak::sysreqs_fix_installed(names(jsonlite::read_json("renv.lock")$Packages))
+          (sysreqs_cmds <- pak::pkg_sysreqs(names(jsonlite::read_json("renv.lock")$Packages), dependencies = FALSE))
+          lapply(unlist(sysreqs_cmds[c("pre_install", "install_scripts", "post_install")]), function(cmd) {
+            system(paste(c("sudo", "sh", "-c", sysreqs_cmds[[cmd]]), collapse = " "))
+          })
         shell: Rscript {0}
 
       - name: Activate renv and restore packages with cache