adding datatype to mprageise rule inputs in params

myousif9 · Nov 7, 2022 · 396959c · 396959c
1 parent bf5b894
commit 396959c
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Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/anat_preproc/workflow/rules/gradcorrect_mprageise_mriqc.smk b/anat_preproc/workflow/rules/gradcorrect_mprageise_mriqc.smk
@@ -66,12 +66,14 @@ rule mprageise:
         uni=join(
             "derivatives",
             "gradcorrect",
-            *inputs.input_path["uni"].replace(config["bids_dir"], "").split(os.sep)
+            "anat",
+            os.path.basename(inputs.input_path["uni"])
         ),
         inv2=join(
             "derivatives",
             "gradcorrect",
-            *inputs.input_path["inv2"].replace(config["bids_dir"], "").split(os.sep)
+            "anat",
+            os.path.basename(inputs.input_path["inv2"])
         ),
     output:
         mprageised_uni=bids(

diff --git a/anat_preproc/workflow/scripts/gradcorrect b/anat_preproc/workflow/scripts/gradcorrect