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nextflow clean: Can't perform I/O on pseudo-directories #5647

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nick-youngblut opened this issue Jan 6, 2025 · 0 comments
Open

nextflow clean: Can't perform I/O on pseudo-directories #5647

nick-youngblut opened this issue Jan 6, 2025 · 0 comments

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@nick-youngblut
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Bug report

nextflow clean $RUN_NAME -force -quiet

Error:

ERROR ~ Can't perform I/O on pseudo-directories (trailing slash): /BUCKET_NAME/RUN_NAME/24/0b221c571de08d4b5dcb7f9fcca4e1

Notes:

  • I'm running nextflow clean directory after running nextflow run with the same run name.
  • I'm running the nextflow clean on a GCP Cloud Run job

The working directory in the GCP bucket is not "cleaned".

Expected behavior and actual behavior

See above

Steps to reproduce the problem

See above

Program output

See above

Environment

  • Nextflow version: 24.10.2
  • Java version: 21.0.0
  • Operating system: Linux
  • Bash version: 5.1.16
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@nick-youngblut