Skip to content

Issues: nextflow-io/nextflow

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

443 Open 2,929 Closed
443 Open 2,929 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

workdir on s3 failing with slurm HPC
#5673 opened Jan 15, 2025 by kweisscure51
1
Fusion doesn't work on AWS China region, the AWS access key id you provided does not exist in our records. storage/aws storage/fusion
#5671 opened Jan 15, 2025 by waynewang117
@fntlnz
6
Not authenticated to use blobs outside of Azure blob container working directory when using Azure Entra storage/azure
#5669 opened Jan 14, 2025 by adamrtalbot
1
1
LSF job status unknown should probably be treated as HOLD not EXIT executor/lsf
#5666 opened Jan 14, 2025 by mp15
Incorrect behaviour when clone url format is provided in Azure repos software/git
#5665 opened Jan 14, 2025 by jorgee
1
Workflow output definition (2nd preview) not publishing bug
#5658 opened Jan 9, 2025 by LDeakin
1
conda + pip install create tmp files in yml file path software/conda
#5656 opened Jan 8, 2025 by yinshiyi
2
CLI parameter case normalization/translation (kebab-case to camelCase) doesn't work at all since recent update bug
#5655 opened Jan 8, 2025 by mhoban
1
2
tower option does not respect configuration priority lang/config
#5654 opened Jan 8, 2025 by VasLem
2
Poor File Staging/Unstaging Performance with Google Batch Executor
#5653 opened Jan 7, 2025 by KatieAtGordian
nextflow clean: Can't perform I/O on pseudo-directories
#5647 opened Jan 6, 2025 by nick-youngblut
Feature request : Support Pueue as executor
#5642 opened Jan 6, 2025 by GhisF
8
Task retried in same workdir possibly due to failed trace retrieval
#5641 opened Jan 5, 2025 by jchorl
2
runOptions not respected for Docker and Google Batch executor/google-batch software/docker
#5640 opened Jan 5, 2025 by VasLem
Feature Request: Support disk directive with local executor
#5636 opened Jan 3, 2025 by schorlton-bugseq
1
2
NF does not perform proxy authentification and cannot access github
#5634 opened Jan 3, 2025 by kpetrov
4
docs: more examples of dynamic resource calculations
#5626 opened Dec 27, 2024 by nick-youngblut
mamba env create stalls wontfix
#5625 opened Dec 23, 2024 by nick-youngblut
3
env config not working with GCP Batch triage/needs-information
#5623 opened Dec 21, 2024 by nick-youngblut
4
Docs: permissions required for service account if using google.batch.serviceAccountEmail docs executor/google-batch
#5622 opened Dec 21, 2024 by nick-youngblut
@christopher-hakkaart
1
Subworkflow alias not being recognized in module.config lang/config lang/modules
#5621 opened Dec 19, 2024 by bielasilva
1
Nextflow output tags don't propagate to subdirectories on S3
#5619 opened Dec 17, 2024 by willbradshaw
1
docs: examples of using env(name) input docs
#5616 opened Dec 16, 2024 by nick-youngblut
1
Secrets not working with bash .command.run
#5613 opened Dec 15, 2024 by nick-youngblut
3
maxErrorRetry does not seem to be used for K8sResponseException 500 (tunnel disconnect) executor/k8s
#5604 opened Dec 13, 2024 by alanbchristie
6
ProTip! Mix and match filters to narrow down what you’re looking for.