Skip to content
nf-core CI

Template update for nf-core/tools version 3.1.1 #177

Sign in to view logs

Template update for nf-core/tools version 3.1.1

Template update for nf-core/tools version 3.1.1 #177

Triggered via pull request January 15, 2025 15:52
@jmuhlichjmuhlich
synchronize #73
jmuhlich:template-merge
Status Success
Total duration 30m 13s
Artifacts –

ci.yml

on: pull_request
Check for changes
16s
Check for changes
Matrix: test
confirm-pass
0s
confirm-pass
Fit to window
Zoom out
Zoom in

Annotations

16 errors and 34 warnings
Run tests (subworkflows/local/utils_nfcore_mcmicro_pipeline/tests/initialisation.nf.test docker NF-24.04.2)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run tests (subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-24.04.2)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run tests (subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run tests (subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-latest-everything)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run tests (subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run tests (subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run tests (subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run tests (subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-24.04.2)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run tests (subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-24.04.2)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run tests (subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-24.04.2)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run tests (subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-24.04.2)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run tests (subworkflows/local/utils_nfcore_mcmicro_pipeline/tests/initialisation.nf.test docker NF-latest-everything)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run tests (tests/workflows/mcmicro.nf.test docker NF-24.04.2)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run tests (tests/workflows/mcmicro.nf.test docker NF-latest-everything)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run tests (tests/main.nf.test docker NF-latest-everything)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run tests (tests/main.nf.test docker NF-24.04.2)
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Check for changes
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (subworkflows/local/utils_nfcore_mcmicro_pipeline/tests/initialisation.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (subworkflows/local/utils_nfcore_mcmicro_pipeline/tests/initialisation.nf.test docker NF-24.04.2)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run tests (subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-24.04.2)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run tests (subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run tests (subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-latest-everything)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run tests (subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run tests (subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run tests (subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run tests (subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-24.04.2)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run tests (subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-24.04.2)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run tests (subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-24.04.2)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run tests (subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (subworkflows/nf-core/utils_nfschema_plugin/tests/main.nf.test docker NF-24.04.2)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run tests (subworkflows/local/utils_nfcore_mcmicro_pipeline/tests/initialisation.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (subworkflows/local/utils_nfcore_mcmicro_pipeline/tests/initialisation.nf.test docker NF-latest-everything)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run tests (tests/workflows/mcmicro.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/workflows/mcmicro.nf.test docker NF-24.04.2)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run tests (tests/workflows/mcmicro.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/workflows/mcmicro.nf.test docker NF-latest-everything)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run tests (tests/main.nf.test docker NF-latest-everything)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/main.nf.test docker NF-latest-everything)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run tests (tests/main.nf.test docker NF-24.04.2)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Run tests (tests/main.nf.test docker NF-24.04.2)
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
confirm-pass
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636