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Use new nf-test features#6286

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edmundmiller merged 61 commits intomasternf-core/modules:masterfrom fresh-cinf-core/modules:fresh-ciCopy head branch name to clipboardNov 18, 2024

+916-792

Commits

Commits on Sep 30, 2024

• ci: Attempt to split everything out

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• ci: Add changed since, sharding, and ci

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• ci: Add filter to try to get jobs split up

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• ci: Switch to only-changed

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• ci: See if follow-dependencies works without "related-tests"

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• ci: Remove skipped tests

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• ci: Actually use the nf-test version

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• ci: module => process

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• ci: Clean up job names

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• dummy: Make a change

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• ci: Skip test.tap

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• ci: Add fetch-depth

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• ci: Clean up name

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• ci: Lint everything

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• ci: Get the job names clean

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• ci: Add hide-progress on linting

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• ci: Add psuedocode for conda-fail.yml

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• test: Snapshot the versions contents, not the hash

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• ci: Keep running nf-core lint the way it was

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• ci: Move conda skips out

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• ci: Address a comment

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• style: Move prettier and editorconfig to pre-commit

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• ci: Add note about nf-core lint pre-commit

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• chore: Copy over conda skips

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• ci: only-changed => changed-since

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Commits on Oct 14, 2024

• Add confirm-pass

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Commits on Oct 17, 2024

• ci: dynamically set shards

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• ci: Run 3 process jobs per CI run as an example

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Commits on Oct 23, 2024

• Merge branch 'master' into fresh-ci

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• install nf-test

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• fix install nf-test

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• fix install nf-test

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Commits on Nov 14, 2024

• Merge branch 'master' of github.com:nf-core/modules into fresh-ci

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• ci: Remove dynamic number of shards, and combine process and workflow filters

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• ci: Remove variable Nextflow versions

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• test: Update bowtie versions

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• ci: Fix indention

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• ci: We're not testing multiple python versions

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• style: Clean up job names

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• build: Remove invisible characters?

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• test(bowtie): Bump snapshots

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Commits on Nov 15, 2024

• style: Remove stray comment

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Commits on Nov 17, 2024

• Merge branch 'master' of github.com:nf-core/modules into fresh-ci

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• ci: Add GPU tests in their own workflows

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• ci(gpu): Clean up triggers and make a note about

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• ci: pip install cryptography

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• ci: Try removing path

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Commits on Nov 18, 2024

• ci: Add fetch-depth and remove duplicate checkout

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• test: Remove the second gpu profile

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• ci: Add path back in

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• ci(gpu): Remove changed-since

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• ci: Fix missed dorny/paths-filter update

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• Add changes from codereview

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• style: Remove example TODO comments

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• refactor: Try tags for GPU CI

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• style: Set NFT_WORKDIR as an ENV variable

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• style: Run lsp format on a parabricks module

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• test: Add gpu tags to parabricks

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• ci: Split tags out of matrix

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• Revert "style: Run lsp format on a parabricks module"

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• ci: Fix name

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