Implemented MSISENSORPRO tumor-only analysis #253
bounlupytest.yml
on: pull_request
Check for changes (pytest)
6s
Matrix: pytest
confirm-pass
0s
Annotations
38 warnings
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Check for changes (pytest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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cnvkit docker NF 24.04.2
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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cnvkit docker NF latest-everything
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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concatenate_vcfs docker NF latest-everything
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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freebayes docker NF latest-everything
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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concatenate_vcfs docker NF 24.04.2
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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lofreq docker NF latest-everything
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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freebayes docker NF 24.04.2
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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lofreq docker NF 24.04.2
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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manta docker NF latest-everything
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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manta docker NF 24.04.2
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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mpileup docker NF latest-everything
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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mpileup docker NF 24.04.2
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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msisensorpro docker NF latest-everything
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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msisensorpro docker NF 24.04.2
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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mutect2 docker NF latest-everything
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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mutect2 docker NF 24.04.2
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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tiddit docker NF latest-everything
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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tiddit docker NF 24.04.2
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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msisensorpro docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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msisensorpro docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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lofreq docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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tiddit docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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lofreq docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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tiddit docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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concatenate_vcfs docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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|
mpileup docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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concatenate_vcfs docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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|
mpileup docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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manta docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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manta docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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|
mutect2 docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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mutect2 docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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cnvkit docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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cnvkit docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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freebayes docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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freebayes docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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confirm-pass
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|