Merge remote-tracking branch 'origin/pl_goleft' into pl_goleft

nf-core · Dec 10, 2024 · d28c92f · d28c92f
2 parents a172fbe + b5b2ae2
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diff --git a/docs/usage.md b/docs/usage.md
@@ -585,7 +585,7 @@ This list is by no means exhaustive and it will depend on the specific analysis
 | [mpileup](https://www.htslib.org/doc/samtools-mpileup.html)                                             |  x  |  x  |   x    |     x     |     x      |           -            |
 | [Strelka](https://github.com/Illumina/strelka)                                                          |  x  |  x  |   x    |     x     |     -      |           x            |
 | [Manta](https://github.com/Illumina/manta)                                                              |  x  |  x  |   x    |     x     |     x      |           x            |
-| [indexcov](https://github.com/brentp/goleft/tree/master/indexcov)                                       |  x  |  -  |   x    |     x     |     x      |           x            |
+| [indexcov](https://github.com/brentp/goleft/tree/master/indexcov)                                       |  x  |  -  |   -    |     x     |     -      |           x            |
 | [TIDDIT](https://github.com/SciLifeLab/TIDDIT)                                                          |  x  |  x  |   x    |     x     |     x      |           x            |
 | [ASCAT](https://github.com/VanLoo-lab/ascat)                                                            |  x  |  x  |   -    |     -     |     -      |           x            |
 | [CNVKit](https://cnvkit.readthedocs.io/en/stable/)                                                      |  x  |  x  |   -    |     x     |     x      |           x            |

diff --git a/modules/local/samtools/reindex_bam/environment.yml b/modules/local/samtools/reindex_bam/environment.yml
@@ -1,4 +1,3 @@
-name: samtools_view
 channels:
   - conda-forge
   - bioconda