2873 ntr smooth muscle circular layer cell general grouping term

[JABelfiore]

Definition and references added. Terms to go beneath this are in a separate PR.

[aleixpuigb]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-01-24/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2025-01-24/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

smooth muscle circular layer cell http://purl.obolibrary.org/obo/CL_4047040

Added

• smooth muscle circular layer cell date "2025-01-06T15:40:21Z"^^dateTime

• smooth muscle circular layer cell contributor 0009-0005-7919-4905

• smooth muscle circular layer cell label "smooth muscle circular layer cell"

• smooth muscle circular layer cell IAO_0000115 "A smooth muscle circular layer cell is a specialized cell type found in the inner muscular layer of hollow organs. It is characterized by its spindle shape, single nucleus, lack of striations, involuntary contraction ability, and spiral/helical arrangement around organ lumens. This cell is crucial for peristaltic movements in organs."

  • hasDbXref "PMID:27445346"

  • hasDbXref "PMID:18221249"

• Class: smooth muscle circular layer cell

• smooth muscle circular layer cell SubClassOf smooth muscle cell

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

smooth muscle circular layer cell http://purl.obolibrary.org/obo/CL_4047040

Added

• smooth muscle circular layer cell date "2025-01-06T15:40:21Z"^^dateTime

• smooth muscle circular layer cell contributor 0009-0005-7919-4905

• smooth muscle circular layer cell label "smooth muscle circular layer cell"

• smooth muscle circular layer cell definition "A smooth muscle circular layer cell is a specialized cell type found in the inner muscular layer of hollow organs. It is characterized by its spindle shape, single nucleus, lack of striations, involuntary contraction ability, and spiral/helical arrangement around organ lumens. This cell is crucial for peristaltic movements in organs."

  • database_cross_reference "PMID:27445346"

  • database_cross_reference "PMID:18221249"

• Class: smooth muscle circular layer cell

• smooth muscle circular layer cell SubClassOf smooth muscle cell

[aleixpuigb]

Please see inline comments.

[aleixpuigb]

Remember to use the formula genus+differentia in the first sentence. We avoid to repeat the term label in the first sentence.

[aleixpuigb]

I could not find in the publications the following information:

• spindle shape
• single nucleus
• lack of striation
• involuntary contraction ability
  However, are not those characteristics common to all smooth muscle cells?

[aleixpuigb]

From what I have been reading it seems that these cells could be part of the circular muscle layer of muscular coat